PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041034.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 319aa    MW: 35905.4 Da    PI: 7.4291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041034.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.2e-52111341128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhP+deelv++yL kkv++++ +l   + evd++k+ePwd+p+++  + kewyf+s+rd+kyatg r+nrat++gyWkatgkd+++l+ kg+
  Pbr041034.1  11 LPPGFRFHPRDEELVCDYLMKKVTQSDSTL---MIEVDLNKCEPWDIPESACVGGKEWYFYSQRDRKYATGLRTNRATATGYWKATGKDRPILR-KGS 104
                  79***********************99666...889************7777799**************************************9.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  lvg++ktLvfy+grapkg+k+dWvmhe+r+
  Pbr041034.1 105 LVGMRKTLVFYQGRAPKGRKSDWVMHEFRV 134
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-592159IPR003441NAC domain
PROSITE profilePS5100555.71411158IPR003441NAC domain
PfamPF023651.3E-2612134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSNISMVEAN LPPGFRFHPR DEELVCDYLM KKVTQSDSTL MIEVDLNKCE PWDIPESACV  60
GGKEWYFYSQ RDRKYATGLR TNRATATGYW KATGKDRPIL RKGSLVGMRK TLVFYQGRAP  120
KGRKSDWVMH EFRVEGPLGP PKISSLKEDW ALCRVFYKNR EIAAKPSMGI SCYDDTSTLT  180
LPALMDSYIS FDGQTQSRTQ TQTQPQESEQ VPCFSMFSQN QNPIFTHTDI TSSQPNIPTK  240
HNNNNDTTTF GGLPNMTNFL DPFSCDKIAL KTVLSHLTKM ESTTYPTLNG SSPSFGEGSS  300
SENYLSDVGM PNNIWSHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-50716111171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041034.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981230.0KF198123.1 Malus hupehensis NAC domain protein (NAC88) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361751.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-121NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A498JRP90.0A0A498JRP9_MALDO; Uncharacterized protein
STRINGXP_009361751.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-116NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]