PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041014.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 934aa    MW: 102898 Da    PI: 7.7486
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041014.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.14.2e-22841921186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+ +ev++Li++r +++ r++ +k +++lWee+s+++ + g++rsp qCk+ w +l ++y++ k g+++r     +++pyf++++
  Pbr041014.1 841 RWKPEEVKKLITMRGKLHGRFQVAKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEESKSGKRSR-----KSWPYFEEMD 921
                  8********************************************************************96.....56*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.103.1E-68101351IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.24E-71102516IPR001279Metallo-beta-lactamase
SMARTSM008496.0E-26114311IPR001279Metallo-beta-lactamase
PfamPF127061.1E-10126261IPR001279Metallo-beta-lactamase
PfamPF075211.7E-5457488IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.211834898IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-5835900IPR009057Homeodomain-like
PfamPF138373.2E-18839921No hitNo description
CDDcd122033.06E-21840905No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MQLGVLGGLS VYHSLCPAPF KPSVSAQMAA LGVLSPCPYS LLWRPKAVGR CFSCSSGSPT  60
AAGTRGSNVR RSGRMEGPRK SMEDSVKRKM EQFYEGREGP PIRVLPIGGL GEIGMNCMLV  120
GNYDRYILID AGVMFPDFDE LGVQKIIPDT TFIKKWSHKI EAIVITHGHE DHIGALPWVI  180
PALDLDTPIF ASSFTMELIK KRLKEHGIFV PSRLRTFRTK RKFTAGPFEI EPIRVTHSIP  240
DCCGLVLRCS DGTILHTGDW KIDESPLDGR GFDREALEEL SKEGVTLMMS DSTNVLSPGR  300
TTSESSVADA LLRHISAAKG RIITTQFASN IHRLGSVKAA ADFTGRKLVF VGMSLRTYLD  360
AAWKDGKAPI DPSSLVKVED IDSYAPKDLL IVTTGSQAEP RAALNLASFG SSHSVKLTKE  420
DVILYSAKVI PGNESRVMKM LNRISDLGST IVMGKNEGLH TSGHGYRGEL EEVLQIVKPQ  480
HFLPIHGELL FLKEHELLGK STGIHHTTVI KNGEMLGVSH LRNRRVLSSG FTMLGKENLQ  540
LKFSDGDKAF GTSSELCVDE RLRIALDGII VVSMEILRPQ NVNDSAENSI KGKIKITTRC  600
LWLDKGKLID ALYKAAHAAL SSCPINCPLA HMERTVSEVL RKLVRKYSGK RPDVIAIAME  660
NPAVVLADEV SARLSGKSHV GSEMSQLRKV YDRHQNKGLS TRTQADDSKT QTYFQSQSTR  720
AQADGDKDNT LQSISQQDTE ALTLSMFCSF ISSESELEDD GIEVEGLLPE EDSATSSSKS  780
EKLSSDSEDS EDFWKSLVRL STGDKSVQDE NGLVAEQEHP QKDGPEDSEL PNSSKPVKRN  840
RWKPEEVKKL ITMRGKLHGR FQVAKGRMAL WEEISRNLLA DGINRSPGQC KSLWASLVQK  900
YEESKSGKRS RKSWPYFEEM DGALSDSEEL ATK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A3e-8910266019560RIBONUCLEASE J
5a0t_B3e-8910266019560RIBONUCLEASE J
5a0v_A3e-8910266019560RIBONUCLEASE J
5a0v_B3e-8910266019560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041014.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346516.10.0PREDICTED: uncharacterized protein LOC103938240
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A498JJX20.0A0A498JJX2_MALDO; Uncharacterized protein
STRINGXP_009346516.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]