PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YB | ||||||||
Protein Properties | Length: 246aa MW: 26859.8 Da PI: 6.0297 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 166.6 | 3.2e-52 | 56 | 150 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdr++Pianv+rim+++lP +akis+daket+qecvse+i+f+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl++yl++yre e+ Pbr040915.1 56 VREQDRYMPIANVIRIMRRILPPHAKISDDAKETMQECVSEYIAFITGEANERCQREQRKTVTAEDVLWAMGKLGFDNYVEPLTIYLQRYRESES 150 69******************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.1E-50 | 53 | 161 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.9E-38 | 59 | 161 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.7E-25 | 62 | 126 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.5E-16 | 90 | 108 | No hit | No description |
PRINTS | PR00615 | 3.5E-16 | 109 | 127 | No hit | No description |
PRINTS | PR00615 | 3.5E-16 | 128 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MERMGGGLPS RHAKSWNPAN ANSSDGGNAI ANTSNPANSA GNSDNNTEQR APQCLVREQD 60 RYMPIANVIR IMRRILPPHA KISDDAKETM QECVSEYIAF ITGEANERCQ REQRKTVTAE 120 DVLWAMGKLG FDNYVEPLTI YLQRYRESES SDRSQFVKRE ERQPTDYCPP GHAVPQVAMM 180 SPPPPSYGPG YYFGPQHGPP MCDPSMMGMF RDDSSSGAGG GGSSSASGAQ GENSLGRFDP 240 FGHFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-58 | 56 | 147 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040915.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009338979.1 | 1e-118 | PREDICTED: nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | A0A498IKH1 | 1e-138 | A0A498IKH1_MALDO; Uncharacterized protein | ||||
STRING | XP_009346554.1 | 1e-141 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 8e-60 | nuclear factor Y, subunit B6 |