PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040909.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 347aa    MW: 38527.8 Da    PI: 7.8678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040909.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12168215355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L   ++YIk+Lq
  Pbr040909.1 168 QDHIIAERKRREKLSQRFIALSAIIPGL-----KKMDKASVLGDSIKYIKQLQ 215
                  5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.751165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-16169231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17169228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10169215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-12170219No hitNo description
SMARTSM003532.7E-14171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEISSRGGLS ELGMEDPFFI NQWQYMNSLD ELGMLPLAAE IGDNLQHSHF HPTFNFKTPI  60
DNSHTGIDRP AKQLKTDGWP SCKTDHLVSN PQVASSPNIL SFVNSNHANQ MAVLKPKEEA  120
AAVCSKSTNS LPSDLLLSQG SFGNQNCLFK ASQGTNRNST NPRLSATQDH IIAERKRREK  180
LSQRFIALSA IIPGLKKMDK ASVLGDSIKY IKQLQDKVKT LEEQTRNKNM ESVVFVKKTQ  240
LFANGDKTSS DENNSTGPFD ATLPEIEARF CDNNVLIRIH CEKRKGVVEK TISEVEKLQL  300
KFINSSVMTF GSCALDVTII AQMEAEFSLS VQDLVKNLRT AFNLFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14169229869Transcription factor MYC2
5gnj_B4e-14169229869Transcription factor MYC2
5gnj_E4e-14169229869Transcription factor MYC2
5gnj_F4e-14169229869Transcription factor MYC2
5gnj_G4e-14169229869Transcription factor MYC2
5gnj_I4e-14169229869Transcription factor MYC2
5gnj_M4e-14169229869Transcription factor MYC2
5gnj_N4e-14169229869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178ERKRRE
2174179RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040909.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346451.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_009346457.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0723e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A498IW180.0A0A498IW18_MALDO; Uncharacterized protein
STRINGXP_009346450.10.0(Pyrus x bretschneideri)
STRINGXP_009346456.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-63bHLH family protein