PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HSF | ||||||||
Protein Properties | Length: 517aa MW: 57141.4 Da PI: 4.5441 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 43 | 134 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+k+ll++i+ Pbr040862.1 43 FLSKTYDMVDDPATDPVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQKHLLKSIN 130 9********************999*****************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Pbr040862.1 131 RRKP 134 **96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.7E-39 | 37 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-63 | 39 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.44E-36 | 39 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.7E-20 | 43 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.1E-32 | 43 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-20 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 82 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-20 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MEAANNNNGD EIPTAGGTHQ EDSGSSSAPA PAPLLNSNAP PPFLSKTYDM VDDPATDPVV 60 SWSPTNNSFV VWNPPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKIDPDR WEFANEGFLR 120 GQKHLLKSIN RRKPTHGHSH QQQQPSHGQN SMGACVEVGK FGLEEEVERL KRDKNVLMQE 180 LIRLRQQQQS TDNQLQTMVQ RLQGMEQRQQ QMMSFLAKAM HSPDFFTQFV QKNESNRRIT 240 EVNKKRRLKQ EGIAERERSN APDGQIVKYQ PPMNGAAKAM LRQIMNTDTS SRLESFNNNS 300 DNFLISDGSS SSSAIDSGSS SSRLSGVTLQ EVPLTSVHGL PSAISETQSS LRTANSGTVM 360 RYPFSDVNAL VGEESPSISI PQTNVNIPEL SQIADMSPEG LVDIPEESMA ADDIGVGFIE 420 NMTSEAGDGF MDPTSLVMNG SLPIDFDDIS SDIEAFLKDW DDVLQNPGAD EMDSICAGVP 480 MENEKQQPTE NGWDKTQNMD NLTEKMGLLT SETKGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-27 | 41 | 132 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-27 | 41 | 132 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-27 | 41 | 132 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-27 | 41 | 132 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 249 | NKKRRLKQ |
2 | 243 | 248 | KKRRLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040862.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346396.1 | 0.0 | PREDICTED: heat stress transcription factor A-1d-like | ||||
Swissprot | Q9LQM7 | 1e-167 | HFA1D_ARATH; Heat stress transcription factor A-1d | ||||
TrEMBL | A0A498HM00 | 0.0 | A0A498HM00_MALDO; Uncharacterized protein | ||||
STRING | XP_009346396.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1843 | 31 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-125 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
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