PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040660.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 311aa    MW: 34857 Da    PI: 7.3384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040660.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.1e-14115166155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Pbr040660.1 115 QRMTHIVVERNRRKQMNEYLAVLRSLMPQS---YAQRGDQASIVGGAINFVKELE 166
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.29E-13113170No hitNo description
SuperFamilySSF474591.27E-16114185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.548114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-14115179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-9120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTLEAVVYPQ EYPFSFGCKD FYSFNGGGSW GSDFISQDQQ GNNEYWDYCS SSPSLLQNVK  60
DWDPNTSPEA CTVDQSCQSG QHLSAMEAPP QLATTSRRKR RRTKSSKNKE EIENQRMTHI  120
VVERNRRKQM NEYLAVLRSL MPQSYAQRGD QASIVGGAIN FVKELEQLCQ SMNSNKRSKQ  180
QPLADFFTFP QFSTRATQNN NSAGVQANES NTTQCNNNQW AAADIEVTMV DNHANLKILS  240
KKRPRQLLKM VAGLQSLRLS VLHLNVTTAD EMVLYSVSVK IEEGCPLNTV DEIAAAVNQM  300
LRTIQEAAFS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101RKRRR
297102RKRRRT
3115126RMTHIVVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040660.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894290.0KP689429.1 Prunus pseudocerasus isolate Unigene16433 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373431.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T48e-90BH096_ARATH; Transcription factor bHLH96
TrEMBLD9ZIP60.0D9ZIP6_MALDO; BHLH domain class transcription factor
STRINGXP_009373431.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]