PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040541.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27169.5 Da    PI: 8.8412
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040541.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.21e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+t+k++ey+s
  Pbr040541.1  9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTNKMHEYIS 59
                 569**********************************************86 PP
2K-box775.1e-2671163193
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                  yqk+ g +l+ ++ es++  l kLk+ +++L+re+R++lG dL+ L + eL +L +++++sl  iR++K++++++q+e+++kk k+l+++  +
  Pbr040541.1  71 YQKTMGIDLWRTHDESMKDTLWKLKEINNKLRREIRQRLGHDLNGLRFDELASLDDEMQSSLDAIRQRKYHVIKTQTETTKKKVKNLEQRRGN 163
                  78999999*******************************************************************************998755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.188161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-35295IPR002100Transcription factor, MADS-box
CDDcd002651.94E-37280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-1882164IPR002487Transcription factor, K-box
PROSITE profilePS5129713.72184177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TNKMHEYISP  60
TTTTKSMYDD YQKTMGIDLW RTHDESMKDT LWKLKEINNK LRREIRQRLG HDLNGLRFDE  120
LASLDDEMQS SLDAIRQRKY HVIKTQTETT KKKVKNLEQR RGNMLHGYFD QEAASEDPQY  180
GYEDNEGDYE SALALANGAN NLYTFHLHRN SDHLHHGGSS LGSSITHLHD LRLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-15159159MEF2C
5f28_B5e-15159159MEF2C
5f28_C5e-15159159MEF2C
5f28_D5e-15159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040541.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640170.0KP164017.1 Pyrus pyrifolia clone PpBS-1 B-sister-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346295.11e-175PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
SwissprotQ003J21e-105TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A0D4ZYJ21e-173A0A0D4ZYJ2_PYRPY; B-sister-like MADS-box protein
STRINGXP_009346295.11e-174(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]