PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040486.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 680aa    MW: 77980.7 Da    PI: 6.8435
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040486.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.11.4e-1842125490
         FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  n+YA + GFs+rk + ++ ++n+ + +r+++Cskeg++ +e+   e ++ +r  trtgCka ++ + e +g+w+++ ++  HnHe+a
  Pbr040486.1  42 NTYAFNKGFSIRKGHLRRDSQNN-VRQREYTCSKEGFQVDEDLC-EARKVRRLDTRTGCKAVIRFNVE-NGVWKLSYINPIHNHEFA 125
                  89****************97766.****************9998.899999****************9.***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1642125IPR004330FAR1 DNA binding domain
PfamPF105511.1E-23247342IPR018289MULE transposase domain
PROSITE profilePS5096610.41527563IPR007527Zinc finger, SWIM-type
PfamPF044348.8E-6538563IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-5538565IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDSDSQKESL EKSDNDEVFG EIDELRVGME VSDEAEAYQL CNTYAFNKGF SIRKGHLRRD  60
SQNNVRQREY TCSKEGFQVD EDLCEARKVR RLDTRTGCKA VIRFNVENGV WKLSYINPIH  120
NHEFARPEER QFLRSGRNIP SVRATILGSS KFDGSIRPAK LQSCSGKEFG SAENVGVSNK  180
DSHNCLQRGK DELIAGDGQS LINYFKHKQM EDPSFFYSVQ VDQFNRITNY FWRDSRSKLD  240
YDCFADVVCF DTTFRTNNNL ICAPFLGVNH HWKNISFGCA FLLDESTASF TWLFETFLES  300
MGNKQPVTIF TDENKAMEKA KAIEIVFPET RHLLSNWQIS KNATQHLGSL YADPEFKKHF  360
NKCFYDCFTE QELQHAWDDM IKMFNLESNS WLKMLYSLRE KWCPAFSSDA FSANIGSSQR  420
GENTNTIFHQ VSRKIVDLVS FVQHYEQKTK KMRFTELEED FRCKNAKPRL RVNSSIFKHA  480
ATEYTVKMYS FFENELMSIF GVRMVEVGND GNQYIYEAVE EGHQRVFMIQ YNSTTSTVSC  540
SCKLFESMGL LCRHALKVLD SKNFTSIPTQ YIVKRWTREA KKGIVASNKF SKSSDGKANS  600
SQSLRLSELM HEGTNVFSIG SLCDSGKRIV KQKLAETIKL LESDEDTTYM LGNLSKVDDQ  660
SVRDMSLDNG SVESPGCDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346054.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5VVL20.0M5VVL2_PRUPE; Uncharacterized protein
STRINGXP_009346054.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-106FAR1-related sequence 5