PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr039926.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 604aa MW: 63387.4 Da PI: 8.856

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr039926.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.5	8e-41	195	321	2	104
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ + s +ss+s+ s + Pbr039926.1 195 PVAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNISLRSSGSSLSFPpsksaphsfh 292 5789*****************************************************************99987777777777444445555667777 PP TCP 89 ........................kaaksaakskksqksa 104 + q ++ Pbr039926.1 293 galalahhphydegcahsglmgfhQ-----------QLQQ 321 7777777777776655443333221...........2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-39	200	333	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.023	201	255	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MDLSNFQPNN NKKQQQQQQQ NNNTSTSTSN NTTTSLHHHH LLPHLQQKFQ HHHQQQHPSS 60 SSSYSSSFVG PFDGIRSSSG GGGGGGGPRS MSSISIQAGL TATSQSTPPP PTTSAPSSSS 120 FSSSSSTSSP SSTSTSTAPP QLVDASLAMA TRSDPHPPTR PGSLLDSAKN NQIQQQLTIS 180 PATTPPPAAA ATTTPVAKRS TKDRHTKVEG RGRRIRMPAT CAARVFQLTR ELGHKSDGET 240 IEWLLQQAEP SIIAATGTGT IPANFSTLNI SLRSSGSSLS FPPSKSAPHS FHGALALAHH 300 PHYDEGCAHS GLMGFHQQLQ QQQHPQHHHQ PHQSPLMTAD QIAEALPSGG RDSGGGGGGE 360 STENYMRKRF REDLFKDDNQ ERGESGSGGG GGSPSRNKAF KGGSSCGLQL PKQQQQGAEL 420 GSYSSGVLRP SNILPATAMW AVAPAPTSGA GSTFWMLPVT AGSAVPSMAT GTSGAGPSEA 480 AQMWTFPSAT ASHVSTLQAP LHFMPRFNLP GSLEFQQAAA GSRGSPLQLG SMLMQQQPSQ 540 HLGLGLSESN LGMLAALNAY SRGGLNMNSD HQQSHHHPLD HHQQQHHQHQ TTDSGDEGPN 600 SSQ*

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MDLSNFQPNN NKKQQQQQQQ NNNTSTSTSN NTTTSLHHHH LLPHLQQKFQ HHHQQQHPSS  60
SSSYSSSFVG PFDGIRSSSG GGGGGGGPRS MSSISIQAGL TATSQSTPPP PTTSAPSSSS  120
FSSSSSTSSP SSTSTSTAPP QLVDASLAMA TRSDPHPPTR PGSLLDSAKN NQIQQQLTIS  180
PATTPPPAAA ATTTPVAKRS TKDRHTKVEG RGRRIRMPAT CAARVFQLTR ELGHKSDGET  240
IEWLLQQAEP SIIAATGTGT IPANFSTLNI SLRSSGSSLS FPPSKSAPHS FHGALALAHH  300
PHYDEGCAHS GLMGFHQQLQ QQQHPQHHHQ PHQSPLMTAD QIAEALPSGG RDSGGGGGGE  360
STENYMRKRF REDLFKDDNQ ERGESGSGGG GGSPSRNKAF KGGSSCGLQL PKQQQQGAEL  420
GSYSSGVLRP SNILPATAMW AVAPAPTSGA GSTFWMLPVT AGSAVPSMAT GTSGAGPSEA  480
AQMWTFPSAT ASHVSTLQAP LHFMPRFNLP GSLEFQQAAA GSRGSPLQLG SMLMQQQPSQ  540
HLGLGLSESN LGMLAALNAY SRGGLNMNSD HQQSHHHPLD HHQQQHHQHQ TTDSGDEGPN  600
SSQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	356	GGRDSGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr039926.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009345828.1	0.0	PREDICTED: transcription factor TCP8-like isoform X1
Refseq	XP_009345851.1	0.0	PREDICTED: transcription factor TCP8-like isoform X1
TrEMBL	A0A498HVJ7	0.0	A0A498HVJ7_MALDO; Uncharacterized protein
STRING	XP_009345828.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009345851.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-68	TCP family protein