PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 484aa MW: 52572.5 Da PI: 8.5278 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.5 | 4e-37 | 71 | 231 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa.sec.. 73 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ +++sa Pbr039609.1 71 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnssfpdtpkqlsdekrascergGFDSAeI-Efd 167 689*************************************************************888888888888777777776664444421.233 PP TCP 74 .eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmri 132 + ++++s+ +n+s++ + +++a+s+ s++s+ s l+l++ r+kar+rarer ++++ + Pbr039609.1 168 qNYHQNQSQPGNQSQHLSLSKSACSSTSETSKGSGLSLSRseirVNRSKARERARERAAKDKEK 231 3556666666677777777777788888888888888887533355599999999987776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-44 | 72 | 231 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.345 | 73 | 131 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.115 | 211 | 231 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MEVEEIQASN KFPRIGNGSS RDHKPSPEDE DNQDPSCLDL KRAAAATAAA DAGNRLRGWH 60 HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTAIQ FYDLQDRLGY DQPSKAVEWL 120 IKAAADAIAE LPSLNNSSFP DTPKQLSDEK RASCERGGFD SAEIEFDQNY HQNQSQPGNQ 180 SQHLSLSKSA CSSTSETSKG SGLSLSRSEI RVNRSKARER ARERAAKDKE KESIESTYPG 240 NINNISQQNG SFTELLTAGI GNIHNNNSPT ASAQHHQQNH GGGGEPILFH KAAAPMDYFS 300 PGLLGLSSSA RTHHSSGFSG QIHLGMNSIP QTMSVVSPFN VSGEHHHGHH SSELQHFSFV 360 PDLIPVTTSS QPGSGVDYNL NFSISSSGGL AGFNRGTLQS NSSSSPSLLP HHLQRFSPID 420 GSSNVPFFIG AAAAAASPTM ENHHHHHHHQ QHQQQFPGGF DRRLQQLYGD GTRHSDHKGK 480 AKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-24 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-24 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039609.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB531019 | 0.0 | AB531019.1 Malus x domestica MdTCP2A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360918.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Refseq | XP_009360919.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Refseq | XP_009360920.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Refseq | XP_009360921.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Refseq | XP_009360922.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
TrEMBL | D5MRQ0 | 0.0 | D5MRQ0_MALDO; MdTCP2A protein | ||||
STRING | XP_009360918.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 6e-45 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |