PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr039557.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 278aa MW: 30500.2 Da PI: 5.2076

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr039557.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.0007	227	263	13	54
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+++++ Lr ++P + ++ +++L +Av+Y+ksL Pbr039557.1 227 RQKMKKMVRALRGIVPGgN------EMNTVAVLDEAVQYLKSL 263 7999999999999999955......8***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.467	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-4	221	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-6	224	268	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.2E-8	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-8	227	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MNIGVNVKKY RAIKEVGKIL MSVGVIAYSH QMQVCQSDQQ FDPNKAAPPF SNQVGNNYMH 60 IPVASGCGAV LPNDANHFKP FHGVEFQTSS ICPKNFIIFD QTDHRSQIMF NPEISHKITG 120 PAFNLCAAYI QDNLGLNEGN IDNREASSTL KEDSDDIDAL LSLEEEELED YDEEEVSTAR 180 TRGNYGSSFS DSCSSYGLKT KKEGLCSSLE KSTAIGSSSS CNGERKRQKM KKMVRALRGI 240 VPGGNEMNTV AVLDEAVQYL KSLKVELQKL GVENLND*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr039557.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018503941.1	0.0	PREDICTED: transcription factor bHLH144
Swissprot	Q9ASX9	2e-49	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A498IT81	0.0	A0A498IT81_MALDO; Uncharacterized protein
STRING	XP_009360862.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11411	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	4e-37	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]