PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039503.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27847.6 Da    PI: 9.8322
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039503.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.84.6e-312574150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
  Pbr039503.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYA 74
                 79***********************************************8 PP
2K-box111.87.1e-37931894100
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  s++ s++ea ++++qqe+akL+++i +Lq+ +R+++G+ L+s+ +k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  Pbr039503.1  93 SNTGSVSEASTQYYQQEAAKLRAQIVKLQNDNRNMMGDALSSMPVKDLKSLENKLEKGISRIRSKKNELLFAEIEYMQKRELDLHNNNQLLRAKIAE 189
                  4444599***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.4451777IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-401776IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-331890IPR002100Transcription factor, MADS-box
CDDcd002659.23E-451894No hitNo description
PRINTSPR004048.4E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003191.3E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-335475IPR002100Transcription factor, MADS-box
PfamPF014869.2E-28100187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.851103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAYESKSLSM DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVVFSNRGRL YEYANNSVKG TIERYKKACA DSSNTGSVSE ASTQYYQQEA AKLRAQIVKL  120
QNDNRNMMGD ALSSMPVKDL KSLENKLEKG ISRIRSKKNE LLFAEIEYMQ KRELDLHNNN  180
QLLRAKIAEN ERGQQNINVM AGGGSYEILQ SQPYDSRDYF QVNVLQPNNH YNPRHDQISL  240
QLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q9e-201785169Myocyte-specific enhancer factor 2B
1tqe_R9e-201785169Myocyte-specific enhancer factor 2B
1tqe_S9e-201785169Myocyte-specific enhancer factor 2B
6c9l_A9e-201785169Myocyte-specific enhancer factor 2B
6c9l_B9e-201785169Myocyte-specific enhancer factor 2B
6c9l_C9e-201785169Myocyte-specific enhancer factor 2B
6c9l_D9e-201785169Myocyte-specific enhancer factor 2B
6c9l_E9e-201785169Myocyte-specific enhancer factor 2B
6c9l_F9e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640070.0KP164007.1 Pyrus pyrifolia clone PpAG-3 AG MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503931.11e-177PREDICTED: floral homeotic protein AGAMOUS
SwissprotQ408721e-132AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A0D4ZYI71e-178A0A0D4ZYI7_PYRPY; AG MADS-box protein
STRINGXP_009360795.11e-179(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-126MIKC_MADS family protein