PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039418.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 347aa    MW: 38981.2 Da    PI: 5.2885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039418.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-16591401094
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +  +  l +pk+f+++++++  e   ltl+d+   sW+vk++ + + g++ +t+GW+eF ++n L  g fvvF +dgr++f+ +v
  Pbr039418.1  59 N--TEYLHIPKDFLKHIQEDLSERAFLTLTDSLDCSWSVKVS-KTTTGAVRFTDGWQEFLRDNSLGHGNFVVFIYDGRMKFSIRV 140
                  3..34599******888666566778***************3.445556*****************************9996555 PP
2B352.21.1e-162613421298
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +s+++++p  f ++h +k ++++++ +++ + ++W v++ + ++s  + +++GW++F+++n++  gD+++F+l++  + e++v+++ 
  Pbr039418.1 261 TSSNVYVPAAFSRKHFSK-QKQFKIFMKNAEEETWAVNVVHLNTS--HSFSAGWSRFASSNQIGIGDTCIFELVS--SNEMKVRIIH 342
                  456799*********655.4779****************777777..669**********************976..6667888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2044146IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-2144146IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.91548144IPR003340B3 DNA binding domain
CDDcd100172.51E-1648141No hitNo description
SMARTSM010196.1E-1250144IPR003340B3 DNA binding domain
PfamPF023622.8E-1359140IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19247342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-18248342IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.323250344IPR003340B3 DNA binding domain
CDDcd100173.17E-13253341No hitNo description
SMARTSM010191.0E-13255344IPR003340B3 DNA binding domain
PfamPF023621.6E-14261342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNSPTFFKSE FISLYLIKLK FLHVTISFLQ LSSGKMVKNI STNDEKKPSF FRILVAGYNT  60
EYLHIPKDFL KHIQEDLSER AFLTLTDSLD CSWSVKVSKT TTGAVRFTDG WQEFLRDNSL  120
GHGNFVVFIY DGRMKFSIRV YGTNACEREV GSTKIGSTNQ NSTFADTTKM PSGSGGQRKC  180
DGSSSKRPHP SSSCSNDDSG ENLCEPEEDD EDSTSNDWDN DEDNTFDEDS EDDTSEEDME  240
AAAEPESFKS KFPHFKSVIR TSSNVYVPAA FSRKHFSKQK QFKIFMKNAE EETWAVNVVH  300
LNTSHSFSAG WSRFASSNQI GIGDTCIFEL VSSNEMKVRI IHKASV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039418.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345496.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A498J0K30.0A0A498J0K3_MALDO; Uncharacterized protein
STRINGXP_009345496.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-18B3 family protein