PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 414aa MW: 47282.9 Da PI: 9.5605 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.4 | 2.3e-17 | 8 | 98 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f +l+ s++l+ ++l++p +f++++ ++ s+ +l+ ++gr+W+v + +k ++++++ +GW+eF + +++g f++F+++g s+f +v++f+ Pbr039417.1 8 FHKLIVSSTLQAKQLRIPESFVQKFRNE--LSTIAKLTVPDGRVWQVGV--KKVDNKFWFHGGWQEFIEHYSIRVGYFLTFRYEGCSSF--TVHIFN 98 56777888899999********999744..8899***************..********************************987888..888885 PP | |||||||
2 | B3 | 61.8 | 1.2e-19 | 304 | 394 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae++ +g++ ++l++ +gr+W+v++ yr+++ l++GW eF +n+L egD++vF++ + ++ l+v+vfr Pbr039417.1 304 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQSADGRQWSVRCLYRGGR--AKLSQGWYEFTMDNNLGEGDVCVFEFLKMKDIVLKVTVFR 394 78899******************877743...5***************665555..66***********************988899989999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.3E-23 | 5 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-23 | 5 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.81E-19 | 6 | 98 | No hit | No description |
PROSITE profile | PS50863 | 13.719 | 7 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-14 | 8 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-17 | 8 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-25 | 293 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-25 | 294 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.01E-22 | 299 | 394 | No hit | No description |
PROSITE profile | PS50863 | 14.311 | 301 | 396 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-19 | 301 | 396 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-17 | 304 | 394 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MKMMTPYFHK LIVSSTLQAK QLRIPESFVQ KFRNELSTIA KLTVPDGRVW QVGVKKVDNK 60 FWFHGGWQEF IEHYSIRVGY FLTFRYEGCS SFTVHIFNLK TAEINYQPTA LSSTGGSVYR 120 YQVFEEMEDD DSVEILGSSP TSIVIDSLRD KRFGDSANQL MPGKNCTPLL QNLFNGSKPK 180 NCMSRSDAGN LHLSKGDDLQ AGNESTRDNG LQFNVTELKK TVDEVKLRSP GEDTRSIKKT 240 MRKKRKVNPD VQESSSKQEK EVEIRFRFYE SASARKRTVT AEERERAINA AKTFEPDNPF 300 CRVVLRPSYL YRGCIMYLPS CFAEKNLNGV SGFIKLQSAD GRQWSVRCLY RGGRAKLSQG 360 WYEFTMDNNL GEGDVCVFEF LKMKDIVLKV TVFRVLEDAG FVNQPQKRHL TPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-71 | 267 | 397 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-71 | 267 | 397 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039417.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009345495.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-132 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A498IYI6 | 0.0 | A0A498IYI6_MALDO; Uncharacterized protein | ||||
STRING | XP_009345495.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-131 | B3 family protein |
Publications ? help Back to Top | |||
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