PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039282.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HSF | ||||||||
Protein Properties | Length: 336aa MW: 36181.8 Da PI: 4.4213 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116 | 2.3e-36 | 32 | 123 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++liswse+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ Fkkg+k ll++i+ Pbr039282.1 32 FLTKTYQLVDDPSVDDLISWSEDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDFFKKGEKGLLREIQ 119 9*****************************************************************99.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Pbr039282.1 120 RRKI 123 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.7E-59 | 28 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.33E-35 | 29 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.4E-38 | 29 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.7E-32 | 32 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-21 | 32 | 55 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-21 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 71 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-21 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MSSLPAEQNG DSAPAGSGGG GGDSQRSLPT PFLTKTYQLV DDPSVDDLIS WSEDGSAFIV 60 WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANDFFKKG EKGLLREIQR 120 RKISPSVSAA ATVVPPAMAA ISALAPRVSP SNSGDEQVIS SNSSPVAAPA MLASRIRSST 180 STSDVLEENE RLRKENMHLS HELTQLRGLC NNILALMTNY ASGQLESGGG GGGGGGGVED 240 GRTLELSPVK EAEPAAEDAG CDGANAEASG TEEEEEEEEE EMRPRLFGVS IGVKRVRRDE 300 DEEEEHREGS EGAKQEPSDG SLKRDYDATW LELGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-25 | 10 | 121 | 11 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 10 | 121 | 11 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 10 | 121 | 11 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039282.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009345447.1 | 0.0 | PREDICTED: heat stress transcription factor B-2b | ||||
Refseq | XP_009345448.1 | 0.0 | PREDICTED: heat stress transcription factor B-2b | ||||
Refseq | XP_009345449.1 | 0.0 | PREDICTED: heat stress transcription factor B-2b | ||||
Swissprot | Q6Z9C8 | 4e-87 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
Swissprot | Q9T0D3 | 3e-87 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A498K074 | 0.0 | A0A498K074_MALDO; Uncharacterized protein | ||||
STRING | XP_009345447.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 1e-80 | HSF family protein |
Publications ? help Back to Top | |||
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