PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039094.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 334aa MW: 36149.1 Da PI: 9.6021 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.9 | 2.4e-33 | 51 | 106 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHR ++ Pbr039094.1 51 VVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpADPTSLKCAACGCHRNFHRLDQ 106 689******************************9*******************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.3E-28 | 52 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 54 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.032 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.5E-30 | 54 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 194 | 263 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.96E-16 | 197 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.0E-26 | 203 | 259 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MNFTTVTATI QTPDTDTEPP SPSDPKSNFF SSRSLSFTNG AFQPQSTPTM VVAYKECLKN 60 HAASLGGHAL DGCGEFMPSP SSNPADPTSL KCAACGCHRN FHRLDQYRPK SNVIRNPHRL 120 LPAPKPAHYN HSSSPSPSSS PNPTLSPQSP PPVSHLPPSY FASPPQMLLA LSSGFSGPSD 180 EHHHQHQLNP TAVKKTEKYP GEKKRSRTRF SQEQKEKMSS FAEKVGWRLQ KSEERLVEDF 240 CSEVGIGRGV FKVWMHNNKH GRRRLERSGG GNGSIGGGGN MNKNVSEING DGERLGFDSM 300 NAHIAGYNVN ANPLNEGSRA SFHLSNNGSS SSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-19 | 204 | 260 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039094.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360340.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 8 | ||||
Swissprot | Q9SEZ1 | 7e-64 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A498I8U0 | 0.0 | A0A498I8U0_MALDO; Uncharacterized protein | ||||
STRING | XP_009360340.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 8e-60 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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