PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr039078.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 334aa MW: 36763.4 Da PI: 8.8704

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr039078.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.4e-33	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl Pbr039078.1 15 KPRLKWTPELHQRFVEAVSQLGGADKATPKSLMRMMGIHGLTLYHLKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.077	12	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-31	13	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-17	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-23	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-21	113	159	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MVHQNMNLVL STDAKPRLKW TPELHQRFVE AVSQLGGADK ATPKSLMRMM GIHGLTLYHL 60 KSHLQKYRLG KSQQSENSAD IKQEDCKEIQ SSDGHFGADI SDEDHSQINE SLQIAQSLQL 120 QMEVQRKLHE QIEVQRHLQL RIEAQGKYLQ SVLKKAQETL SGYSSSSVGV ELAKAELTQL 180 VSMVSNGCPS SSLSELTATG TSTLKDVERK QMRGSMDSSL TSSESSGRKE EKLPENSNAT 240 CVELPLMATH PDNKAWNNSA SNHVFGRKRS SIPISDGVSV KQPVAKRTQT QRDKGGNHLR 300 KSGFLATIDL NSKYQGDNID SGPKVIDLNC KGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr039078.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009360327.1	0.0	PREDICTED: myb family transcription factor PHL8
Swissprot	F4I274	4e-82	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A1P8C4J0	0.0	A0A1P8C4J0_9ROSA; MYB11
STRING	XP_009360327.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-83	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]