PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 431aa MW: 46482.1 Da PI: 7.3893 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.8 | 2.8e-39 | 67 | 127 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk+ss Pbr039077.1 67 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGIMRNVPVGAGRRKNKNSS 127 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-31 | 52 | 124 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.7E-32 | 69 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.798 | 71 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 73 | 109 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MSGKELAADR QHDDDTSDQI TEDIKAPTAS SGISENPKTP SADRETSSKN GDQSETGSSQ 60 DKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGI MRNVPVGAGR 120 RKNKNSSASQ YRHIFMSDAL QAAHASTANG AHNATLGGNG TVLTFGSDSP LCESMASVLN 180 LAERNQNCMQ NGFHGPEQRL LVSPTAGDNG DDRSSGSSIT ASNSTERGGR ASSQEPSAQN 240 CQTFPPQVPC FPGSPWPYPW NSAQWASAMP PPGFCHSGFP MSFYPAPPYW GCTVPGPWNV 300 PCLSPSSTLS HCATRSGPNS PTLGKHSRDE DIPNPSSSQN EEPAKENSSE RCVWIPKTLR 360 IDDPNEAARS SIWATLGIKN EKGNCTNEGG GLFKAFQSKA DEKNHVVEAS PVLQANPAAF 420 SRSLNFRERT * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039077.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018503825.1 | 0.0 | PREDICTED: cyclic dof factor 2-like | ||||
TrEMBL | A0A498IBV8 | 0.0 | A0A498IBV8_MALDO; Uncharacterized protein | ||||
STRING | XP_009360328.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-104 | cycling DOF factor 2 |