PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039066.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 666aa    MW: 73318.4 Da    PI: 6.5606
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039066.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.8e-23123224199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++ 
  Pbr039066.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFF--RAENGD 216
                  89****************************986445444..8999*********************************************..348888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Pbr039066.1 217 LCVGIRRA 224
                  9****996 PP
2Auxin_resp1132.8e-37284367183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++FevvY+Pr st+eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gtv++v+ +dp+ Wp+S+Wr+L+
  Pbr039066.1 284 AATLAANGQPFEVVYYPRESTPEFCVKASAVRDAMQIRWCSGMRFKMPFETEDSSRISWfMGTVSSVQVADPICWPESPWRLLQ 367
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-37118226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-29118226IPR015300DNA-binding pseudobarrel domain
CDDcd100173.34E-21122223No hitNo description
PROSITE profilePS5086313.084123225IPR003340B3 DNA binding domain
PfamPF023623.1E-21123224IPR003340B3 DNA binding domain
SMARTSM010191.1E-22123225IPR003340B3 DNA binding domain
PfamPF065072.9E-32284367IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MITVMDSVRE PLRSNSEKWL DSQFWHACAG GMVQMPPINS KVFYFPQGHA EYTHGQVDFG  60
NSRIPPLILS KISAIRYMAD PETDEVFAKM RLIPVRESGF DLEDDGFVGN NGTVENPEKP  120
TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG EIWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFF RAENGDLCVG IRRAKRGIGG GPEYPSGWNT  240
TAGNSGSEYG GYSGFSRENG NKVFEKGSSD DAKGKMRAEY VIEAATLAAN GQPFEVVYYP  300
RESTPEFCVK ASAVRDAMQI RWCSGMRFKM PFETEDSSRI SWFMGTVSSV QVADPICWPE  360
SPWRLLQVSW DEPDLLQNVK CVSPWLVELV PSVPSIHPSP FSPPRKKLRL QHNPDYSLVG  420
QLSVPSVCSN FLNSSNPLCN VSDNQSAGIQ GARQAQFGLS SSELFFNKLQ SGLFPIGFQQ  480
LGHFAPLETI GGSFMRKAES NDNISCCPTQ SLKDNDEIKT PHIVLFGQLI FTGQHISKSS  540
SGDDSDGHPK KTTNCSDGSG STSHRHGSVE NCSDGGSPWK TDDSDLSLET GYCKVCIDSG  600
DVGTLDLSVL RSYQELYGKL AGMFGKESSK MLRNVLYRDA SGVVKHTGDE PFGDFLKTAK  660
RLYMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-752038851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345386.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A498JK040.0A0A498JK04_MALDO; Auxin response factor
STRINGXP_009345386.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]