PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr038995.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 742aa MW: 83283.6 Da PI: 6.1945

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr038995.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.5	3.4e-115	368	739	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++ A+av+++d++ a++lL+++++++sp gd +qRla++f+++L+arla+++s++yk l +++ts ++ l+a++l+ +sP+ k+s+++ Pbr038995.1 368 LRTLLISWAQAVAADDHRTANELLKKVRQHSSPFGDGTQRLAHCFANGLEARLAGTGSKIYKGLVSKRTS---AADILKAYHLYLAASPFKKMSNFVS 462 5789**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N +I++ +e+++r+H+iDf+i +G+QWp+L+q ++ R++gpp++RiTg++ p++g +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+++leeL Pbr038995.1 463 NVTIMNLAEKSTRLHVIDFGILYGFQWPTLIQRISWREGGPPKVRITGIEFPQPGfrPAERVEETGRRLAAYAEKFNVPFEYNA-IAKKWETITLEEL 559 **************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+l+Vn+ ++ ++lldesvs++s r++vL+l+++++P+++++ + +n++ F++rf eal ++s+lfd+le+ +pre++er+ +E+e++gr Pbr038995.1 560 KIDKDEVLVVNFLYRGKNLLDESVSVDSVRNRVLDLIRRINPDIFIHGVVNGAYNAPFFVTRFREALFHFSSLFDMLETVVPREDQERMLIEKEIFGR 657 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e+ nv+aceg er+er et+++W+ r +aGF ++p++ + +k a ++ + + + ++e+s +l++gWk+r+ +++SaW+ Pbr038995.1 658 EALNVIACEGWERVERPETYKQWHVRNLRAGFVQIPFDRELVKAAAKKVSSLYHKDFVIDEDSRWLLQGWKGRTAFALSAWK 739 *****************************************99999999888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.512	342	719	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-112	368	739	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MDPRRRGSSD SFNGVQLGNQ PLPILSHPTV VAGSRFDSNT FLDNSYRNFS CPQPGLSANS 60 VSSYSSVSPE DDSAEDCDFS DVVLKYINQM LMEEDMEDKT CMLKESLELQ AAEKSFYEVL 120 GKKYPPSPEL FHRYASQYGE IPAESSSGTW SNYITSSCNS GGYFGDTTSI QSPDGYSSQL 180 QGLPSYRISQ SFNGYGLVDS PNSSIYSPDW NTESQSVWQF NKGVEEASRF LPGETNLVVE 240 LEANEMSVQT PKIGAAASYV KVERTDEGEY SSGGSRGKKN LYREDEDVEE KRSSKQAAFS 300 SESPLRSEMF DVVLLCSTGE GQERLESLRE ALQNGMSKSV IQNGQSEVSK GGKGRGKKQS 360 VKKEVVDLRT LLISWAQAVA ADDHRTANEL LKKVRQHSSP FGDGTQRLAH CFANGLEARL 420 AGTGSKIYKG LVSKRTSAAD ILKAYHLYLA ASPFKKMSNF VSNVTIMNLA EKSTRLHVID 480 FGILYGFQWP TLIQRISWRE GGPPKVRITG IEFPQPGFRP AERVEETGRR LAAYAEKFNV 540 PFEYNAIAKK WETITLEELK IDKDEVLVVN FLYRGKNLLD ESVSVDSVRN RVLDLIRRIN 600 PDIFIHGVVN GAYNAPFFVT RFREALFHFS SLFDMLETVV PREDQERMLI EKEIFGREAL 660 NVIACEGWER VERPETYKQW HVRNLRAGFV QIPFDRELVK AAAKKVSSLY HKDFVIDEDS 720 RWLLQGWKGR TAFALSAWKP A*

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MDPRRRGSSD SFNGVQLGNQ PLPILSHPTV VAGSRFDSNT FLDNSYRNFS CPQPGLSANS  60
VSSYSSVSPE DDSAEDCDFS DVVLKYINQM LMEEDMEDKT CMLKESLELQ AAEKSFYEVL  120
GKKYPPSPEL FHRYASQYGE IPAESSSGTW SNYITSSCNS GGYFGDTTSI QSPDGYSSQL  180
QGLPSYRISQ SFNGYGLVDS PNSSIYSPDW NTESQSVWQF NKGVEEASRF LPGETNLVVE  240
LEANEMSVQT PKIGAAASYV KVERTDEGEY SSGGSRGKKN LYREDEDVEE KRSSKQAAFS  300
SESPLRSEMF DVVLLCSTGE GQERLESLRE ALQNGMSKSV IQNGQSEVSK GGKGRGKKQS  360
VKKEVVDLRT LLISWAQAVA ADDHRTANEL LKKVRQHSSP FGDGTQRLAH CFANGLEARL  420
AGTGSKIYKG LVSKRTSAAD ILKAYHLYLA ASPFKKMSNF VSNVTIMNLA EKSTRLHVID  480
FGILYGFQWP TLIQRISWRE GGPPKVRITG IEFPQPGFRP AERVEETGRR LAAYAEKFNV  540
PFEYNAIAKK WETITLEELK IDKDEVLVVN FLYRGKNLLD ESVSVDSVRN RVLDLIRRIN  600
PDIFIHGVVN GAYNAPFFVT RFREALFHFS SLFDMLETVV PREDQERMLI EKEIFGREAL  660
NVIACEGWER VERPETYKQW HVRNLRAGFV QIPFDRELVK AAAKKVSSLY HKDFVIDEDS  720
RWLLQGWKGR TAFALSAWKP A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-50	376	740	26	379	Protein SCARECROW
5b3h_D	5e-50	376	740	26	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr038995.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018500498.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A498IBE6	0.0	A0A498IBE6_MALDO; Uncharacterized protein
STRING	XP_009345401.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein