PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038937.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 342aa    MW: 38492.2 Da    PI: 4.6506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038937.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.91.2e-13107154354
          AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                   kGVr++k +g+++AeI+  +     +  r +lg+f taeeAa+a+ + ++++e
  Pbr038937.1 107 PKGVRRRK-WGKYAAEIQNpF-----QgIRKWLGTFNTAEEAAAAYQQKKREFE 154
                  59***998.**********55.....45******************99998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.909106170IPR001471AP2/ERF domain
PRINTSPR003674.9E-7107118IPR001471AP2/ERF domain
PfamPF008471.9E-8107154IPR001471AP2/ERF domain
SMARTSM003802.4E-10108160IPR001471AP2/ERF domain
CDDcd000181.20E-11108138No hitNo description
Gene3DG3DSA:3.30.730.108.7E-18108154IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-14108153IPR016177DNA-binding domain
PRINTSPR003674.9E-7129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MPGMKTVVLN QHVSWNKLKK KQPTMEENAG YMKRIRIIYN DPDATDYSSE DGEEYDIEGN  60
LFQHCKRFVS EILVVETECE SSAGTNGGKI GHRMGFDDPK KCNRVLPKGV RRRKWGKYAA  120
EIQNPFQGIR KWLGTFNTAE EAAAAYQQKK REFETIQSQQ KIKSRCRNIQ LSDKHEFESS  180
KLMEGAKHEL QGVPSSEESQ DSSFCHPSPS SVLEISGSAS LSFELERLKE ESCVEVSGGE  240
GAVQQPVFEE EESIPMLPLL DVEQLNLGCK DNYVFSSLDQ FCDGMCGIVD DGTTDIVDYP  300
VFNDKKGEVI CLPPLDSDFG QQDFSWIDQK PEQVMSMKFC S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113KGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324380.0GU732438.1 Malus x domestica AP2 domain class transcription factor (AP2D14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360162.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A498I3350.0A0A498I335_MALDO; Uncharacterized protein
STRINGXP_009360162.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-20ERF family protein