PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038929.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 384aa    MW: 42514.3 Da    PI: 6.4346
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038929.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.56.6e-3751051103
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdeel+++yL++kv++ +++  ++++ vd++k+ePwdLp k++ +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkdke+ + +g 
  Pbr038929.1   5 LPPGFRFHPTDEELITHYLCHKVSDVSFTS-KAVAVVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIRR-TGV 100
                  79*************************999.88***************988999**************************************99.666 PP

          NAM  99 lvglk 103
                  lv ++
  Pbr038929.1 101 LVSCR 105
                  66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-403126IPR003441NAC domain
PROSITE profilePS5100539.1495165IPR003441NAC domain
PfamPF023652.2E-16699IPR003441NAC domain
SuperFamilySSF1019415.75E-40153165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MQESLPPGFR FHPTDEELIT HYLCHKVSDV SFTSKAVAVV DLNKCEPWDL PGKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIRRTGV LVSCRCAGWD EENPSFLQGQ  120
SSKGSTTIGS FGAVILKPLR LITLLLEVPE KHLEEEWVVC RVFQKNISAL KKPQQATTSS  180
QKQPTNESPC DDTNSIVNEF GDIELPNLNS NINANSSSGF SNNISSPQSY YSNILDHSKN  240
NINDVTNMSL KMTWAATAAR EAAANALSLP SSLLSPSNLS VNSLLLRALQ LRSSTNNNGS  300
NYQPRATNHV QATAGTSTLD YSSYDHIQQQ GMMPSMSHHF GSSTTMDHIN SNFQASSSST  360
NDQMMESMPL QHSEQPFNLD SIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-41217114171NO APICAL MERISTEM PROTEIN
1ut4_B7e-41217114171NO APICAL MERISTEM PROTEIN
1ut7_A7e-41217114171NO APICAL MERISTEM PROTEIN
1ut7_B7e-41217114171NO APICAL MERISTEM PROTEIN
4dul_A7e-41217114171NAC domain-containing protein 19
4dul_B7e-41217114171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038929.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393314.20.0protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A498I8910.0A0A498I891_MALDO; Uncharacterized protein
STRINGXP_008393314.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.15e-74NAC domain containing protein 58