PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038923.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 265aa    MW: 29502 Da    PI: 5.2136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038923.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09155203455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L+ ++P +   ++k +  a +L + ++Y++sLq
  Pbr038923.1 155 SHSLAERVRRGKINERLRCLQNIVPGC---SNKTMGMAVMLDEIINYVQSLQ 203
                  8**************************...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.21E-9149207No hitNo description
PROSITE profilePS5088814.85151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16151216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6155203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15155214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-9157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSEFTEDFQS IKPSFPFLDI DPNMELVNQF ADQFNIPSVM EYPSLNFHTY MPFSNDSCLF  60
SNQEPEFPAG NMVENFPKLE VHQIVADGNE SKKRIAVDDA SQSSSGISTP PVSETGITRK  120
NSAGRGKRVK SNEKEDEKPK EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQNIVPG  180
CSNKTMGMAV MLDEIINYVQ SLQNQIEFLS MRLAAASSFY DFKSSTDVTE TMQIAAELER  240
LKREAAGYGG FGASFQSTSS TWSP*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038923.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360148.10.0PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK78e-55BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A498I1110.0A0A498I111_MALDO; Uncharacterized protein
STRINGXP_009360148.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.21e-55BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]