PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038874.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 958aa MW: 107958 Da PI: 8.0971 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1e-09 | 427 | 472 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT+ Ed+ l+ v++ G ++W Ia +g++Rt+ qc r+q Pbr038874.1 427 RKSWTAKEDKNLLYFVQEKGINNWFDIAVSLGTNRTPFQCLARYQR 472 789*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 42.7 | 1.3e-13 | 481 | 524 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ lG g+W ++a+ +g gR + qc +rw k Pbr038874.1 481 REWTKDEDAKLRSAVETLGEGNWQAVASALG-GRAGTQCSNRWKK 524 68*****************************.***********98 PP | |||||||
3 | Myb_DNA-binding | 44.8 | 3e-14 | 534 | 577 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + Pbr038874.1 534 GRWTPEEDKRLKVAQMLFGPKNWNKTAQFVP-GRTQSQCRDRYVN 577 8******************************.***********77 PP | |||||||
4 | Myb_DNA-binding | 40.6 | 5.8e-13 | 586 | 625 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 g WT+eEd +l a++++G W+++a++++ +Rt+++c r Pbr038874.1 586 GEWTEEEDSRLRAAIEEHGYC-WSKVAACVP-RRTDNMCWRR 625 68*****************99.*********.*******666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.04 | 322 | 421 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.4E-4 | 326 | 423 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-11 | 329 | 345 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-11 | 394 | 434 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.82E-16 | 403 | 471 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.466 | 422 | 474 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.9E-9 | 426 | 476 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-7 | 427 | 472 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.63E-7 | 429 | 474 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-12 | 435 | 481 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.59E-19 | 459 | 532 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.088 | 475 | 530 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-13 | 479 | 528 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-13 | 481 | 524 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-16 | 482 | 533 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.82E-10 | 482 | 526 | No hit | No description |
SuperFamily | SSF46689 | 4.75E-23 | 531 | 625 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.066 | 531 | 579 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-12 | 532 | 581 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 534 | 577 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-19 | 534 | 584 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.72E-11 | 535 | 579 | No hit | No description |
PROSITE profile | PS51294 | 18.341 | 580 | 634 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-11 | 584 | 632 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-15 | 585 | 625 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-11 | 586 | 625 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.53E-9 | 587 | 629 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 958 aa Download sequence Send to blast |
MSPPSDDDQD QFSVDEEEED DDLFEADMEA LRRGRMLTGT SPDDLKNDGG GGNDDERQAS 60 ADSESDSDAD DDDLELLRQI RSRFSNSSDA CEPLSLKPLC TLPPDASGDE EDDYQTLLAI 120 RKRFSAYGND TLENDTKQVG SCCKSVKETC DEISAIRNDA LERFPDPEDA DLATNPLSDN 180 AEGQSSALIV WNQSDSCSTS MLPRKDSSFP KAAQVFMDAI KKNRASQKFI RNKLIQIEAK 240 IEENRKLKER VKILKDFQVS CKRRTWESLS QKKDPRVQLI LPKGPRDSRD SKVHDKKISA 300 LLYGPEENSH VANYRMTMKK YLDSLYRKKW SKVEREALEK GIKQQFQEML LQSSVDESSF 360 SERPCGESNH IDDILASIKS LEITPEMIRE FLPKVKWEQV ASMYLPGRSG AECETRWLNW 420 EDPLINRKSW TAKEDKNLLY FVQEKGINNW FDIAVSLGTN RTPFQCLARY QRSLNASILK 480 REWTKDEDAK LRSAVETLGE GNWQAVASAL GGRAGTQCSN RWKKSLHPTK KREGRWTPEE 540 DKRLKVAQML FGPKNWNKTA QFVPGRTQSQ CRDRYVNSLE PSLNYGEWTE EEDSRLRAAI 600 EEHGYCWSKV AACVPRRTDN MCWRRCKVLY PEEVLLLKEQ KKIKKRPALG PNDFLPAIDT 660 TTKTLTYPKK QNGKLSKVPN KTRPRRNKNN SESCSDAHGI DNSHQVETSN GHDVPNKKNN 720 VRKQRRRRRK STEPTGGGQV IVPVPDEHVT HKEEQRETSC SDQIVGTSDG DDTTLAVFQR 780 NKSKKRNLGP PSNDTRKKRK LVVSDCSVQD SPANNIQKGA GSHPEAAIMV CESEQGGLKL 840 DSEPNVAFQE PVIKVAGVSP KSDHDADDIL ASLGKKKSKK RRPQTSKRSP QACPPSSATM 900 KSESLPKGVG LGKGEGLDHC EPVSEIGNNR AEGDHEDGDM TLACFLRNKS KRRRQCG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-27 | 399 | 620 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-27 | 399 | 620 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 721 | 729 | RKQRRRRRK |
2 | 783 | 799 | KKRNLGPPSNDTRKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038874.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360099.1 | 0.0 | PREDICTED: uncharacterized protein LOC103950593 | ||||
TrEMBL | A0A1P8SEZ9 | 0.0 | A0A1P8SEZ9_9ROSA; MYB type transcriptional factor R4 | ||||
STRING | XP_009360099.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7441 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 0.0 | myb domain protein 4r1 |