PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 202aa MW: 21905.2 Da PI: 8.306 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 87.1 | 1.9e-27 | 10 | 62 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + +YkeCl+NhAaslG++a+DGCgEf+ + ++++ +l+C ACgCHRnFHRr + Pbr038803.1 10 NEVYKECLRNHAASLGSYATDGCGEFTLD---HASPGGLQCVACGCHRNFHRRVTY 62 678*************************8...5689*****************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-22 | 12 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-16 | 13 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.8E-22 | 13 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.234 | 13 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.03E-15 | 111 | 181 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-28 | 114 | 182 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-28 | 124 | 182 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEGDHDPNTN EVYKECLRNH AASLGSYATD GCGEFTLDHA SPGGLQCVAC GCHRNFHRRV 60 TYSATSSQAA GGGRSGHHQH HVIMSCSSRG RDPAENIITQ DQLIDYNAGG GGSPDSGERM 120 SSGKKRVRTK FTAEQKEKML AFAEKLGWKL LRKDLEDEIE RFCKSVGVSR QVFKVWMHNH 180 KNLSSSSTSA STGNASSLTT Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-21 | 125 | 187 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038803.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360029.1 | 1e-150 | PREDICTED: zinc-finger homeodomain protein 11-like | ||||
TrEMBL | A0A314UWY9 | 1e-106 | A0A314UWY9_PRUYE; Zinc-finger homeodomain protein 11 | ||||
STRING | XP_009360029.1 | 1e-150 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-40 | zinc finger homeodomain 1 |