PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038802.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 503aa    MW: 56421.1 Da    PI: 8.9321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038802.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-055577123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C++C++ F r  nL+ H r+H
  Pbr038802.1 55 YICEICNQGFQRDQNLQMHRRRH 77
                 89********************9 PP
2zf-C2H215.26e-05132154123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +C+k +  +s++k H++t+
  Pbr038802.1 132 WVCDKCSKGYAVQSDYKAHLKTC 154
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-55477No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8665577IPR007087Zinc finger, C2H2
SMARTSM003550.00655577IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359057137IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035521096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-4123153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-5127152No hitNo description
SMARTSM0035565132159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MLPNNSSSLV PSSDPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYICEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VKKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NMDRVRPESQ TLQPAACLSR TASSPSPSCS DNNFSRAPST WPPSNNLALP HPSPTEYTKL  240
ILRNPPDHAD HHQATLSKKN SSNAHYNLDL QLATTSNINI PINEVSVSSK REENHSTQLQ  300
LSIGSCEFGG GDRSHQNKTI EQHSNIMIAN RNYSSRGNEV KERERESSST TTNHHEHDDD  360
GQKPKPATVA AGILRLKEEA REQLRLAMAE KDYSEEARQQ AESHIKLAEK EFANAKRIRQ  420
QAQAELDKAH ALKEQAVKKV NSTILQITCH ACKKQFMQGA HEATTNQHSL VLSYMSSAIT  480
SDDHRLEKDI STRTHRAKSA SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17128181356Zinc finger protein JACKDAW
5b3h_F2e-17128181356Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038802.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360028.10.0PREDICTED: protein indeterminate-domain 14-like
TrEMBLA0A498I7X00.0A0A498I7X0_MALDO; Uncharacterized protein
STRINGXP_009360028.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-121C2H2-like zinc finger protein