PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038723.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 369aa    MW: 40663 Da    PI: 5.6019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038723.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.1e-10177224455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN ++  L+el+P +    +k   Ka +L + +++++sLq
  Pbr038723.1 177 SHSLAERARREKINARMKLLQELVPGC----NKISGKALVLDEIINHVQSLQ 224
                  8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-15171241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-10171228No hitNo description
PROSITE profilePS5088814.996173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15173238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7177224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-9179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDPTGATVPG STLPGPELES LQFREEIHQL MTVPPENASS FTALLELPPT DAMELLHLSP  60
ESNSAPLLAG VSADPQHAPY FSIFAGDGSP DISSVPSYSG AELEKVKTEP AEIDSNPNSS  120
QLTLDETKNN PRNSAKRKER EKKIKAPTKK CKTEIKEDAE KMPYVHVRAR RGQATDSHSL  180
AERARREKIN ARMKLLQELV PGCNKISGKA LVLDEIINHV QSLQHQVEFL SMRLAAVNPG  240
IDFNLNSILA AELFSALFGG VFMHAFLGVG FQFPSYAVMQ NYYTRQIARE IAPLEPSGPL  300
MESNFAGMVT PLMWPEVSIN AHRQPFQQQW HFDTLQQPGW GREEENHTFI TPEPPLISCD  360
SSANSGRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038723.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345113.10.0PREDICTED: transcription factor bHLH48-like
SwissprotQ3EAI18e-72BH060_ARATH; Transcription factor bHLH60
SwissprotQ8VZ026e-73BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A498I5830.0A0A498I583_MALDO; Uncharacterized protein
STRINGXP_009345113.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.22e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]