PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038634.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 759aa    MW: 82455.4 Da    PI: 5.7134
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038634.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.72.1e-3090174187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s  +++f+++ea
  Pbr038634.1  90 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSEMEA 174
                  8*********************************************************************866665..*******85 PP
2trihelix1071.3e-33484569187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k evlaLi++r+ +e r++++  k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  Pbr038634.1 484 RWPKAEVLALIKLRSGLEPRYQEAGPKGPLWEEISAGMGRMGYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 569
                  8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.03687149IPR001005SANT/Myb domain
CDDcd122037.06E-2789154No hitNo description
PfamPF138371.4E-2189175No hitNo description
PROSITE profilePS500906.42389147IPR017877Myb-like domain
PROSITE profilePS500907.143477541IPR017877Myb-like domain
SMARTSM007178.1E-4481543IPR001005SANT/Myb domain
PfamPF138371.3E-22483570No hitNo description
CDDcd122031.75E-29484548No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MQQQPAAGGA GGVGGSQTHY GGGGEMSAAE AEASAEQGQL VVEAASPISS RPPASAAVNM  60
DELMTLSGAA VAAEDALADR SGGGGSSGNR WPRQETLALL KIRSDMDAAF RDATLKGPLW  120
EDVSRKLAEL GYKRNAKKCK EKFENVHKYY KRTKEGRAGR QDGKSYKFFS EMEALHGTAA  180
ATTANVSASS GVHAAHASPN PVSVGFGPVS NPMPISSFRM SPTIPVMPSQ QQQQATAIQI  240
IPSSQPTATP MDVNFSSNSS STSPGTEDED DDDDMEGEPS SRKRKRGSAS TSTGTSGGGS  300
TRKMMAFFEV LMKQVMQKQE SMQRRFLEVI EKREQDRTIR EEAWKRQEMA RLTREHELMS  360
QERAISASRD AAIIAFLQKI TGQTIQLPPA VNVQVAPPPP VSPSVSVVAP LPQTTPQPTT  420
QTYQIPQQQQ PQPPQQVQQV RHAQQTQNVQ AVMAVPEQQV PPTPQENIAS GGGGGSSEPA  480
SSSRWPKAEV LALIKLRSGL EPRYQEAGPK GPLWEEISAG MGRMGYKRSS KRCKEKWENI  540
NKYFKKVKES NKKRPEDAKT CPYFHELDAL YRKRVLGGGS SGGSSSSLGN RLEQQPQQQE  600
NPKSGSSTHP QPSAHTVSQT QGQVVAAGSE NKDADHSTSV ETNLRANLFG EGKEEAAKKP  660
EDIVKELMEV HDHHQQVFQG LPQHLVVEDY NRIEEADSDN LMDQEEEDME DDDIDEEDDE  720
ETEQERKMAY KIEFQKQNTG RSSNGGGNGA PSFLAMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140KRNAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038634.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360257.10.0PREDICTED: trihelix transcription factor GTL1 isoform X1
SwissprotQ391172e-68TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A498JJ110.0A0A498JJ11_MALDO; Uncharacterized protein
STRINGXP_009360257.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-46Trihelix family protein