PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038608.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 463aa MW: 51671.4 Da PI: 8.3069 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.5 | 1e-31 | 108 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l Pbr038608.1 108 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGEvGKDRL 205 89****************************66677899*************************************************76688899999 PP EEEEE-S CS B3 93 vvkvfrk 99 ++ ++r+ Pbr038608.1 206 FIDWRRR 212 9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-42 | 101 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.8E-30 | 105 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-25 | 106 | 195 | No hit | No description |
SMART | SM01019 | 9.2E-23 | 108 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.776 | 108 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-29 | 108 | 212 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MNFGAAAARA RDAGFSTEDD QNMVRGKLPF SYSSSPSSSS SSPHYIKPTG VATLVPSSAV 60 SRSRSWHDGR GSPDTKLELM DSAPRENNED GGAQREENPI PIEREHMFDK VVTPSDVGKL 120 NRLVIPKQHA EKYFPLDSSS NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV 180 KEKKLDAGDI VSFQRGLGEV GKDRLFIDWR RRPDAPYPNH HHHHHPLHPH YQPNFAIPHQ 240 HQYSWNPHRP VPWSPLLMRP PGAVVTPDHL SQQQINYGVN MHHPYRNTGT SGGGSGSYGY 300 GNVVNSTGPI YYLRSASSAA PPQFPEQGDS RLIEFQQHQQ VQLGRVHESN MVLESVPVVH 360 GKAAAKKLRL FGVNMECPIS ESDHECDILS STTLSSSQYH HHHAHHQLSP PSQPPPLQLR 420 LYDGMPLHDQ TMPSTTTTST TTDFLNVSGK ASPSSMSLDF AV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-66 | 103 | 213 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-66 | 103 | 213 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038608.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360230.1 | 0.0 | PREDICTED: B3 domain-containing protein Os03g0120900-like | ||||
TrEMBL | A0A498I4Y6 | 0.0 | A0A498I4Y6_MALDO; Uncharacterized protein | ||||
STRING | XP_009360230.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-65 | B3 family protein |