PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038608.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 463aa    MW: 51671.4 Da    PI: 8.3069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038608.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.51e-31108212199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Pbr038608.1 108 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGEvGKDRL 205
                  89****************************66677899*************************************************76688899999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Pbr038608.1 206 FIDWRRR 212
                  9999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-42101220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-30105217IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-25106195No hitNo description
SMARTSM010199.2E-23108213IPR003340B3 DNA binding domain
PROSITE profilePS5086314.776108213IPR003340B3 DNA binding domain
PfamPF023622.8E-29108212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MNFGAAAARA RDAGFSTEDD QNMVRGKLPF SYSSSPSSSS SSPHYIKPTG VATLVPSSAV  60
SRSRSWHDGR GSPDTKLELM DSAPRENNED GGAQREENPI PIEREHMFDK VVTPSDVGKL  120
NRLVIPKQHA EKYFPLDSSS NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV  180
KEKKLDAGDI VSFQRGLGEV GKDRLFIDWR RRPDAPYPNH HHHHHPLHPH YQPNFAIPHQ  240
HQYSWNPHRP VPWSPLLMRP PGAVVTPDHL SQQQINYGVN MHHPYRNTGT SGGGSGSYGY  300
GNVVNSTGPI YYLRSASSAA PPQFPEQGDS RLIEFQQHQQ VQLGRVHESN MVLESVPVVH  360
GKAAAKKLRL FGVNMECPIS ESDHECDILS STTLSSSQYH HHHAHHQLSP PSQPPPLQLR  420
LYDGMPLHDQ TMPSTTTTST TTDFLNVSGK ASPSSMSLDF AV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-661032133114B3 domain-containing transcription factor NGA1
5os9_B2e-661032133114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360230.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
TrEMBLA0A498I4Y60.0A0A498I4Y6_MALDO; Uncharacterized protein
STRINGXP_009360230.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-65B3 family protein