PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr038445.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 502aa MW: 54218.7 Da PI: 6.3777

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr038445.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	144	204	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Pbr038445.1 144 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 204 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	141	201	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	146	202	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	148	202	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	150	186	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MSEAAKDPAI NLFGKTISVL SSGGDSVGVT RAPEPDPSSG TVAEETVDQD HAASSSSNSS 60 PEVNAHRDRE EKKDTLGEKP IQKTQENGIP TLSSEELANP DAASRIGVNR ESPVEKESAT 120 LKTEKTEEEQ SETSNSQDKT LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR 180 YWTAGGTMRN VPVGAGRRKN KNSASHYRHI TVSEAMPNAQ ADGLNGVHHP SVQPNGTVLT 240 FCRDTPLCES VASVHLADKN IQNCTRNEFQ KPEGLRTPAS YGAGVTGDDH LTGSTATDSN 300 SKDEACKFGS QEQVMHNYQG FPPQIPCFPG APWPYPWNSP IAPPAFCPPG YPMSFYPAAA 360 YWGCAVQGAW SIPWLPPPLS SNNSASSSGP NSPTLGKHSR EENTVKQNSS EEEAPPREKS 420 AERNLWIPKT LRIDDPGEAA KSSIWATLGI KNDKADSVSS GGLFKAFQSK GDQKNHLSDA 480 SQVLQANPAA LSRSLNFQET S*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MSEAAKDPAI NLFGKTISVL SSGGDSVGVT RAPEPDPSSG TVAEETVDQD HAASSSSNSS  60
PEVNAHRDRE EKKDTLGEKP IQKTQENGIP TLSSEELANP DAASRIGVNR ESPVEKESAT  120
LKTEKTEEEQ SETSNSQDKT LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR  180
YWTAGGTMRN VPVGAGRRKN KNSASHYRHI TVSEAMPNAQ ADGLNGVHHP SVQPNGTVLT  240
FCRDTPLCES VASVHLADKN IQNCTRNEFQ KPEGLRTPAS YGAGVTGDDH LTGSTATDSN  300
SKDEACKFGS QEQVMHNYQG FPPQIPCFPG APWPYPWNSP IAPPAFCPPG YPMSFYPAAA  360
YWGCAVQGAW SIPWLPPPLS SNNSASSSGP NSPTLGKHSR EENTVKQNSS EEEAPPREKS  420
AERNLWIPKT LRIDDPGEAA KSSIWATLGI KNDKADSVSS GGLFKAFQSK GDQKNHLSDA  480
SQVLQANPAA LSRSLNFQET S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr038445.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009360614.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X2
TrEMBL	A0A498HCY0	0.0	A0A498HCY0_MALDO; Uncharacterized protein
STRING	XP_009360613.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-89	cycling DOF factor 2