PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038298.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 91aa MW: 10318.9 Da PI: 10.3956 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.6 | 1.1e-13 | 5 | 69 | 35 | 99 |
EEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 35 tltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +tl+d++grsW v+l+ ++s+ l++GW+e kan++ gD++vF+++++s v++frk Pbr038298.1 5 SVTLQDPDGRSWFVRLRTlyAGRSDYLNLSTGWRECGKANQISLGDTIVFEFVKQSVI--QVHIFRK 69 59**************766588888899***********************9875555..9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.944 | 1 | 70 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-13 | 4 | 69 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-15 | 5 | 70 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-11 | 5 | 69 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.31E-11 | 5 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MDKDSVTLQD PDGRSWFVRL RTLYAGRSDY LNLSTGWREC GKANQISLGD TIVFEFVKQS 60 VIQVHIFRKG EVRGNVCRLV LVAPYGKKKR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038298.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008366489.2 | 9e-55 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_008366490.2 | 8e-55 | putative B3 domain-containing protein At5g66980 isoform X2 | ||||
Refseq | XP_028944861.1 | 4e-55 | putative B3 domain-containing protein Os03g0621600 isoform X3 | ||||
TrEMBL | A0A498IJ59 | 2e-53 | A0A498IJ59_MALDO; Uncharacterized protein | ||||
STRING | XP_009340826.1 | 4e-59 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7185 | 15 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-07 | B3 family protein |