PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038296.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 306aa    MW: 34894.3 Da    PI: 9.9409
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038296.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-16261041499
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + l++p kf+++++g +++  + +l+ +sg + +v+l  + ++++ ++ +GW+ Fvk++ L+ gD +vFk+dg+s+f  +v ++++
  Pbr038296.1  26 H-LRIPPKFVKNFNGWSPC--KCVLRGPSGLRRTVEL--EERKNGLFFNGGWQYFVKDHYLENGDLLVFKYDGESKF--KVAIYDT 104
                  4.99******888877555..8***************..**********************************9999..8888775 PP
2B339.88e-132022831497
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   r ++pkk a + +    ++k ++++d++grsW vkl +r+k+++  + +++G  e +kan++  gD vvF+++++s   l ++++
  Pbr038296.1 202 YRATIPKKLAVAEEVL--KKKSIMIQDSTGRSWLVKLDVRGKGSQyrVDMATGLGECCKANQVLPGDEVVFEFVKQSL--LQIHIY 283
                  56799***99777544..3456***************88777666558889*********************887443..466665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-209107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2110107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.05512105IPR003340B3 DNA binding domain
CDDcd100173.52E-1514103No hitNo description
SMARTSM010194.4E-1215105IPR003340B3 DNA binding domain
PfamPF023624.9E-1426103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-11185285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-11185284IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.911189286IPR003340B3 DNA binding domain
CDDcd100171.34E-7191284No hitNo description
SMARTSM010190.0017192286IPR003340B3 DNA binding domain
PfamPF023622.5E-10203284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MARKLVKQSQ KKQSFYTILL GDYARHLRIP PKFVKNFNGW SPCKCVLRGP SGLRRTVELE  60
ERKNGLFFNG GWQYFVKDHY LENGDLLVFK YDGESKFKVA IYDTTACEKD VEIADSWRIR  120
SSVPLFSNGH ARVKEEIVEL ETENYNENCE NKVFISGRKK CNYLISGKIP SHDHREATST  180
QSILFKSKNS CFIAIFNNPR RYRATIPKKL AVAEEVLKKK SIMIQDSTGR SWLVKLDVRG  240
KGSQYRVDMA TGLGECCKAN QVLPGDEVVF EFVKQSLLQI HIYRVEALGG KSLRLLSPNV  300
IEKAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038296.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499504.10.0PREDICTED: putative B3 domain-containing protein Os04g0347400
TrEMBLA0A498IIZ10.0A0A498IIZ1_MALDO; Uncharacterized protein
STRINGXP_009341395.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-15B3 family protein