PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038255.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HB-other
Protein Properties Length: 370aa    MW: 40775.1 Da    PI: 8.382
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038255.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.22.5e-071474755
                 --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 f +++++e+e+  ++  n  ps+e    LA+k            ++ +qV +WFqNrR+  
  Pbr038255.1 14 FVQSEVTEMEAILQQynNTMPSREVLMALADKFsesperkgkiTVQMKQVWNWFQNRRYAI 74
                 66788889999998666999*********************99999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-10476IPR009057Homeodomain-like
SMARTSM003890.004781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-71379IPR009057Homeodomain-like
PROSITE profilePS500719.7661377IPR001356Homeobox domain
CDDcd000867.05E-41375No hitNo description
PfamPF000467.4E-51474IPR001356Homeobox domain
PfamPF167192.7E-40131256IPR032001SAWADEE domain
CDDcd000240.0039143176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFVQSEVT EMEAILQQYN NTMPSREVLM ALADKFSESP ERKGKITVQM  60
KQVWNWFQNR RYAIRAKSSK VLGKLDVSPM SRDDSAAARN VPQGPQQIAA PIHAPPVPGS  120
GKVVPENAIH EFEAKSGRDG AWYDVANFLA HRNLETGNPE VLVRFAGFGP EEDEWVNVRK  180
HVRQRSLPCE SSECVAVLPG DLILCFQEGK EQALYFDAHV LDAQRRRHDV RGCRCRFLVR  240
YVHDQSEEIV PLRKVCRRPE TDYRLQQLHA VNEAISAERK SMEHFMVSAT SGEMMQKQQN  300
AEAAHVPPTF HVTASLPTQA TTPELRRTDI STVVSAGNSN APVSSTAVTS VPATVTAPGG  360
SVSGVPKGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A8e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B8e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A8e-461322606134SHH1 SAWADEE
4iur_B8e-461322606134SHH1 SAWADEE
4iut_A8e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B8e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A8e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B8e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A8e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B8e-461322606134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038255.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340492.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-144SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A498IJA40.0A0A498IJA4_MALDO; Uncharacterized protein
STRINGXP_009340492.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-130sequence-specific DNA binding transcription factors;sequence-specific DNA binding