PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 431aa MW: 46697.9 Da PI: 6.9525 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.8 | 8.5e-30 | 43 | 142 | 1 | 66 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................. 65 a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ Pbr038238.1 43 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELpswnlyststtasvpgvethnptttgihcfagv 140 589**************************************************************777777655544444444444443333333333 PP TCP 66 .s 66 Pbr038238.1 141 dA 142 31 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.4E-31 | 44 | 109 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.273 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MGDSHHHQAT TSSRLGIRPP SSGGGVVSTD IVEVVRGSHI VRATGRKDRH SKVCTAKGPR 60 DRRVRLAAHT AIQFYDVQDR LGYDRPSKAV DWLIKKAKAA IDELDELPSW NLYSTSTTAS 120 VPGVETHNPT TTGIHCFAGV DAIGSANRRT TMVGSGVSEQ QIVQNPNSNL TFLPPSLDSD 180 AIADTIKSFF PTGASAIAAA AEAPSSTIQF HQNYPPDLLS RTSSQSQDLR LSLQSFQDPI 240 LLHQHHAHTH QNEQSLFSGS QNPLGFDGSS AAWAEHHHNQ QQQEINRFQR MVAWNSGDGD 300 SGDNGGGSSS SGGFTFNSLL PTQQSSTSSL QQQQSLFGQS QFFFQRGPLQ SSNSPSIRAW 360 MMDQQNQQSI SHDHHHQISQ SIHHQPSFSS MGFTSGGEFS GFHIPARIHG EEEHDGISDK 420 PSSASSNSRH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 51 | 104 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 51 | 104 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038238.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB531021 | 0.0 | AB531021.1 Malus x domestica MdTCP4A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340343.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-104 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | D5MRQ2 | 0.0 | D5MRQ2_MALDO; MdTCP4A protein | ||||
STRING | XP_009340343.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-73 | TCP family protein |