PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038199.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 1019aa    MW: 112166 Da    PI: 7.4968
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038199.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08574622348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
      Pbr038199.1 574 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 622
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.869567626IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-11569628IPR009057Homeodomain-like
SuperFamilySSF466892.77E-15569629IPR009057Homeodomain-like
SMARTSM007171.2E-8571624IPR001005SANT/Myb domain
CDDcd116607.40E-19573623No hitNo description
PfamPF002496.8E-6574622IPR001005SANT/Myb domain
PROSITE profilePS5171046.955679904IPR031167OBG-type guanine nucleotide-binding (G) domain
Gene3DG3DSA:3.40.50.3007.5E-41680788IPR027417P-loop containing nucleoside triphosphate hydrolase
TIGRFAMsTIGR002312.1E-19680826IPR005225Small GTP-binding protein domain
PfamPF019262.9E-20680796IPR006073GTP binding domain
SuperFamilySSF525408.94E-52680921IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd018964.31E-147680914No hitNo description
PRINTSPR003261.0E-28681701IPR006073GTP binding domain
PRINTSPR003261.0E-28702720IPR006073GTP binding domain
PRINTSPR003261.0E-28729744IPR006073GTP binding domain
PROSITE patternPS009050731744IPR006074GTP1/OBG, conserved site
PRINTSPR003261.0E-28746764IPR006073GTP binding domain
PfamPF168976.5E-41800908IPR031662GTP binding protein, second domain
Gene3DG3DSA:3.40.50.3007.5E-41855922IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF812712.09E-13903985IPR012676TGS-like
CDDcd016661.84E-40908985No hitNo description
PfamPF028242.4E-22909985IPR004095TGS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
METVVGVEGN DEGMYEESGV EKSSSSLSSP KQIADPVVYK LVRVEGNGRL VPATDDEVME  60
VEDFLVDETV ELPVVPDAGN VRCISNEESS SGKPQKENSE GLSHSENTEA DAKLNARLEY  120
IEMLQKVNQE ERLHLACGSP DHSSFMNVDM HCSDQHDKLP AIDEKLQSEI HLQDIGPPSS  180
PSPDGSHINE SGRIGECSKQ LPDGPIESGS SACVICTSSK PDVNTLKGEI CLDNLSIREL  240
HELFRATFGR ETTVKDKLWL KRRITMGLTN SCDVSTTTFT IIDNKLVKKG KDDSIQNADG  300
MLAEGSDGEA KNHGYETSPT SHSSQMENHH TVSGKRLGNS SVELDCGSED LHTDQRAAKR  360
VRKPTKRYIE ELSEVESKDC SPKVISPVKN AGQGQTSVKS CRPLGNVPLN EKATVNRLDP  420
LGNVTNVPSN ERTYVTRLDS LGGSGVQVPY VSRVRRSRPR KNIMALMKFD MSVMGVTAKL  480
VKEAFSVRSS LPESEHADKV LKTRSASEQM KSQARSSSLN FTLKKDKRRS VTGTIEPDKN  540
MGMKQTDSSE DNSDDGSAQI PTAKGGMRRK HHRAWTLVEV IKLVEGVSKC GTGRWSEIKR  600
LSFASYSYRT SVDLKDKWRN LLKASFAQTP PDEGINSRKH ASVPIPASIL VKVRELAEMH  660
AQGSSGGGDG FEVTKFGHGR VALIGFPSVG KSTLLTMLTG THSEAASYEF TTLTCIPGII  720
HYNDTKIQLL DLPGIIEGAS EGKGRGRQVI AVAKSSDIVL MVLDASKSEG HRQILTKELE  780
AVGLRLNKKP PQIYFKKKKT GGISFNSTLT LTHVDEKLCY QILHEYKIHN AELLFREDAT  840
VDDLIDVIEG NRKYMKCVYV YNKIDVIGID DVDKLARQPN SVVISCNLKA SYLNFDRLLA  900
KMWEEMGLVR VYTKPQGQQP DFGDPVVLSA DRGGCSVGDF CNHIHRSLVK EVKYVLVWGT  960
SARHYPQHCG LGHVLNDEDV VQIVKKKDKE GEGRGRFKSH STDPARISDR VKKAPLKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a9a_A1e-11767098664376RIBOSOME-INTERACTING GTPASE 1
4a9a_B1e-11767098664376RIBOSOME-INTERACTING GTPASE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454460RRSRPRK
2522528LKKDKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038199.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339863.10.0PREDICTED: uncharacterized protein LOC103932042 isoform X1
RefseqXP_009339871.10.0PREDICTED: uncharacterized protein LOC103932042 isoform X1
TrEMBLA0A498J4Q30.0A0A498J4Q3_MALDO; Uncharacterized protein
STRINGXP_009339863.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-113TRF-like 6