PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038099.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 335aa    MW: 37558.4 Da    PI: 8.6661
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038099.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.11.4e-3965141278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC+adls+++eyhrrh+vCe hsk+pvv+v+g+++rfCqqCsr h+l efDe+krsCr+rL++hn+rrrk+++
  Pbr038099.1  65 CLVDGCRADLSRCREYHRRHRVCELHSKTPVVVVKGEQKRFCQQCSRVHSLVEFDEGKRSCRKRLNGHNQRRRKPKP 141
                  **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-3160126IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.0662139IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.1E-3663145IPR004333Transcription factor, SBP-box
PfamPF031102.9E-2965138IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEWDFKDSDL DALVGSSISQ PQMKSRPAES LGLDFKKLQE DPIKLSSSRR INGSNNGSDH  60
LKVLCLVDGC RADLSRCREY HRRHRVCELH SKTPVVVVKG EQKRFCQQCS RVHSLVEFDE  120
GKRSCRKRLN GHNQRRRKPK PESFYFSSHD FFSTCKGPRI LQFSNPQVCA TTNVRCMWPV  180
EDKRGAESMC SNHHHQWLRA TDEPKPPNSF NGAGHEPFLF VQASDPKATA GNRAAPQAFM  240
CQQQPLPITA AASPKSTRGC ALYLLSSHPT QNPVTGLNHL AQSPVTTTHP GQILDARLQM  300
NRGFSEFSCS HDEEDRTVIP EMMFLPGPDG FSNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2655138284squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038099.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344929.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018500406.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018500407.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018500408.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A498HKH20.0A0A498HKH2_MALDO; Uncharacterized protein
STRINGXP_009344927.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-43SBP family protein