PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 123aa MW: 13969.4 Da PI: 10.0296 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77 | 1.4e-24 | 13 | 56 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKA ELS+LC+ evaviifs+tgkl+++ss Pbr038022.1 13 ARQVTFSKRRRGIFKKAGELSILCESEVAVIIFSQTGKLFDFSS 56 59****************************************96 PP | |||||||
2 | K-box | 29.4 | 3.3e-11 | 57 | 104 | 22 | 69 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 ++L ke+e ++R+++G dLe+L+l eLq+Le+ +e sl ++ ++K Pbr038022.1 57 SRLSKELEDKSCKLRQMKGVDLEDLDLDELQKLEKLVEASLGRVIQTK 104 67888888888899****************************998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.217 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-27 | 2 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-23 | 2 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.4E-22 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-14 | 20 | 35 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-14 | 35 | 56 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.975 | 49 | 122 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.4E-8 | 57 | 104 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MKIKIRKIDY LPARQVTFSK RRRGIFKKAG ELSILCESEV AVIIFSQTGK LFDFSSSRLS 60 KELEDKSCKL RQMKGVDLED LDLDELQKLE KLVEASLGRV IQTKVCANYK FILLQVNTGH 120 GF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038022.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB775140 | 2e-91 | AB775140.1 Pyrus pyrifolia var. culta PpMADS13-1tw mRNA for dormancy-associated MADS-box transcription factor, complete cds. | |||
GenBank | KC261355 | 2e-91 | KC261355.1 Pyrus pyrifolia cultivar Suli dormancy-associated MADS-box transcription factor (MADS1) mRNA, complete cds. | |||
GenBank | KR349307 | 2e-91 | KR349307.1 Pyrus pyrifolia cultivar mixue dormancy-associated MADS-box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018500348.1 | 2e-50 | PREDICTED: MADS-box protein AGL24-like | ||||
Swissprot | Q9FVC1 | 9e-36 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A0D4ZY53 | 1e-57 | A0A0D4ZY53_PYRPY; DAM2-like MADS-box protein | ||||
TrEMBL | D0FZF3 | 1e-57 | D0FZF3_PYRPY; Dormancy-associated MADS-box transcription factor | ||||
STRING | XP_009344701.1 | 2e-50 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.2 | 9e-28 | MIKC_MADS family protein |