PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037963.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 498aa    MW: 56371.9 Da    PI: 4.6946
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037963.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-141622391499
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + l lpkkf+ eh   +++++ ++ledesg+++  k+  +k +    l++GW++F  a++L egD+vvF++   + ++l+v ++r+
  Pbr037963.1 162 KELGLPKKFCCEHL--PKQDTIIVLEDESGEEFYTKYLLEKVG----LSGGWRGFSIAHDLLEGDVVVFHVL--TPTKLKVYIVRS 239
                  4589******9994..346789***************655555....***********************43..677789999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.025149240IPR003340B3 DNA binding domain
SMARTSM010191.2E-9150240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-15157241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-16162241IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-12162239IPR003340B3 DNA binding domain
CDDcd100171.26E-16164238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDVYYKAKNY SIFYFQVQGR NCCEVRPRGD SLGSFRELVD WVAACDGELV MDVYYKAKNY  60
SIFYFQVQGR NCCEVRPRGD SLGSFRELVD WVAACDGELV MDVYYKAKNY SIFYFQVQGR  120
NCCEVRPRGD SLGSFRELVD WVAACDGELV MDVYYKAKNW EKELGLPKKF CCEHLPKQDT  180
IIVLEDESGE EFYTKYLLEK VGLSGGWRGF SIAHDLLEGD VVVFHVLTPT KLKVYIVRSN  240
GSDDLDGALG LMRLDACTKQ MDTGDIVACE REDSENLESI PEDNAIAFDT KSGPSSDHSG  300
NDSENLDFEV LDGLRLSETV VTFEEVNCME NFNVLVNGLN INSVFSKHIL RKYYELCCSQ  360
NAFLHEQLIE GLNCKLVAGV ISETVNIADA IRACKRTTSK GNFSTWDTTL KAFDDLGMNV  420
GFLRARLDHL ASLALKSKRF KEAKLEKDRA EEEKRNLEAK LVEVQSGINR LDSEMKTLNT  480
SSEKLELMFQ EVAKAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037963.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344651.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498J3P70.0A0A498J3P7_MALDO; Uncharacterized protein
STRINGXP_009344651.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-26B3 family protein