PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037961.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 437aa MW: 49022.5 Da PI: 6.6624 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 4e-16 | 108 | 197 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +kv++ps v+ +l l kf +eh+ k ++ +++lede+gr++e k+ ++k++ l++GW++F a+++ gD v+F+l+ +f+++v ++r+ Pbr037961.1 108 LKVMMPSQVSGGFCLNLATKFRREHMPK--QDSMIVLEDENGREFETKYLVEKGG----LSGGWRGFSIAHKIMKGDAVIFHLVT--RFKFKVYIIRS 197 69***********************744..6669***************666666....9**********************976..67779999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-18 | 99 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-20 | 100 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.92E-22 | 105 | 196 | No hit | No description |
SMART | SM01019 | 3.5E-13 | 107 | 198 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.42 | 107 | 198 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-13 | 108 | 197 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MVEAMAILQD QKQSSTNPLL LLPPPPPPHK GMATEKPFGQ KPPCLQLKTT SNVLNAKTNP 60 IMLECRKRKT PVRVTVESLY ESSQAQSSVM ERAKKIEASL NPRFPSLLKV MMPSQVSGGF 120 CLNLATKFRR EHMPKQDSMI VLEDENGREF ETKYLVEKGG LSGGWRGFSI AHKIMKGDAV 180 IFHLVTRFKF KVYIIRSNEV DCNFPLMRVD PPIKQVDTGG VTARGKEREI LEPIPQENAI 240 VCYTDSGPIS DQSENDCVDV GSEFLDGLRL SESVVTFKEV NCLENFNVQV NGLIINSEFS 300 KYIMTKYYEL CCSQNSFLHG QLLEGLNCKL IAGVISETVN IADAIRACKI TTPEDYLSTW 360 DKTLKAFDDL GMNVRFLRAR LDQLASLASK SRRPKEANVL EIKEAMDSRL DSEIETPNRS 420 SEEQEIMFQE LAKAPW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037961.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009344646.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
Refseq | XP_009344647.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A498J2M1 | 0.0 | A0A498J2M1_MALDO; Uncharacterized protein | ||||
STRING | XP_009344646.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009344647.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-36 | B3 family protein |