PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037960.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 346aa    MW: 38554.8 Da    PI: 4.6925
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037960.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.5e-16187599
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 ++ps+v+   +l lpkkf+ eh   +++++ ++ledesg+++  k+  +k +    l++GW++F  a++L egD+vvF++   + ++l+v ++r+
  Pbr037960.1  1 MLPSHVTGGFWLGLPKKFCCEHL--PKQDTIIVLEDESGEEFYTKYLLEKVG----LSGGWRGFSIAHDLLEGDVVVFHVL--TPTKLKVYIVRS 87
                 5799***************9994..346789***************655555....***********************43..677789999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.829188IPR003340B3 DNA binding domain
SMARTSM010193.2E-12188IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-16189IPR015300DNA-binding pseudobarrel domain
PfamPF023629.1E-14187IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-18189IPR015300DNA-binding pseudobarrel domain
CDDcd100175.90E-22186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLPSHVTGGF WLGLPKKFCC EHLPKQDTII VLEDESGEEF YTKYLLEKVG LSGGWRGFSI  60
AHDLLEGDVV VFHVLTPTKL KVYIVRSNGS DDLDGALGLM RLDACTKQMD TGDIVACERE  120
DSENLESIPE DNAIAFDTKS GPSSDHSGND SENLDFEVLD GLRLSETVVT FEEVNCMENF  180
NVLVNGLNIN SVFSKHILRK YYELCCSQNA FLHEQLIEGL NCKLVAGVIS ETVNIADAIR  240
ACKRTTSKGN FSTWDTTLKA FDDLGMNVGF LRARLDHLAS LALKSKRFKE AKLEKDRAEE  300
EKRNLEAKLV EVQSGINRLD SEMKTLNTSS EKLELMFQEV AKAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037960.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344651.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498J3P70.0A0A498J3P7_MALDO; Uncharacterized protein
STRINGXP_009344651.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-36B3 family protein