PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 366aa MW: 41517.3 Da PI: 5.6643 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.7 | 7.3e-12 | 77 | 164 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 f k+l +sdv + gr+v+pk+ ae h ++ ke + l l d ++W+v+++++ + ++ +++ + +++ +a+gL +gD+v++ Pbr037867.1 77 FHKKLQNSDVRAIGRIVIPKREAECHfpvlES-KEAGLWLHLDDmDYMQVWTVRFRFWPNERSrMYIFDHTRSLIQAHGLSAGDTVMLF 164 89*********************999**9654.456679999996666*******996665555666669***************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 69 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-14 | 75 | 167 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-16 | 75 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.698 | 77 | 180 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-7 | 77 | 180 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-8 | 77 | 164 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MAGVYEKNNV AAAASEDNLA GSSRSGEPIR SRNSYQRNPR DEPLVHEPVA RQPPVLLDPP 60 PTPHPRLFNP QQMRFLFHKK LQNSDVRAIG RIVIPKREAE CHFPVLESKE AGLWLHLDDM 120 DYMQVWTVRF RFWPNERSRM YIFDHTRSLI QAHGLSAGDT VMLFKDDQLG SYLLRAMRDA 180 VRPLSHPTTH NPIRLPSRLP YDPLQDFEVE SSVVPRVLKY NHQTIENIAV NVGVMNESRS 240 SNNLGVQITE QDHQTTVRSN NNVDVAVALV EEHHQTSVHE SNNVAMEDYQ TINANNNVIT 300 NVEAANEMIF PNLEDHNSST LTSLSSLFGS DNHGSSYDFG YPIDESWKVG MDDMDFDFSN 360 FSLPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 1e-29 | 73 | 178 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 1e-29 | 73 | 178 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037867.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008369649.1 | 1e-77 | uncharacterized protein LOC103433185 | ||||
TrEMBL | A0A498HQG3 | 0.0 | A0A498HQG3_MALDO; Uncharacterized protein | ||||
STRING | XP_008369649.1 | 5e-77 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 1e-31 | B3 family protein |