PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037852.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 344aa    MW: 38361.6 Da    PI: 5.5733
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037852.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.12e-2742135186
     trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rWt+qe+l+Li+++r+ e r + ++        + +p+W++vs++++++g++r+p+qC+++w+nl++++kki+e+e +r++e++s +++ ++l+
  Pbr037852.1  42 RWTRQEILVLINGKRYAEGRGGVRAprsdfgsgQLEPKWAAVSNYCKKHGVNREPVQCRKRWSNLAGDFKKIREWEAQRKDETESYWVMRNDLR 135
                  8*******************996433455666699******************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-1242131No hitNo description
Gene3DG3DSA:1.10.10.608.9E-542106IPR009057Homeodomain-like
PROSITE profilePS500906.49342107IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MASVQQVTLI PVDGDSNGVD ARNPTSADTG GDDSSKAPRL PRWTRQEILV LINGKRYAEG  60
RGGVRAPRSD FGSGQLEPKW AAVSNYCKKH GVNREPVQCR KRWSNLAGDF KKIREWEAQR  120
KDETESYWVM RNDLRRERKL PGFFDKEVYD IMEAVPGTPV TLALPGPNRV ESEEGKEEGT  180
AEEAENLFDS IQRPTEEGLF SDDESGRSPE KEVRFKEGPG ISAPLPISEK AYKPTPQGHQ  240
EPQAHQGQGA VGPKQPASIP EVGSTSQDRK RKRFAMEGDE EGSTLENQLI DVMERNGKML  300
ADYLHAQNSH SQLDREQRKE HSDNLVAVLN KLADAFMRIA EKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037852.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359882.10.0PREDICTED: trihelix transcription factor ASR3-like
SwissprotQ8VZ202e-93ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A498HL870.0A0A498HL87_MALDO; Uncharacterized protein
STRINGXP_009359882.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-96Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]