PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037762.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 1022aa MW: 112731 Da PI: 7.4399

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037762.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.5	5.2e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++ v ++ qrfCqqCsrfh l+efDe++rsCrrrLa+hn+rrrk+++ Pbr037762.1 148 VCQVEDCKADLSNAKDYHRRHKVCDMHSKATKASVGNVLQRFCQQCSRFHVLQEFDEGRRSCRRRLAGHNRRRRKTHP 225 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.1E-32	145	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.804	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.41E-37	147	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.7E-29	149	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.05E-7	735	915	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	260	795	824	IPR002110	Ankyrin repeat
CDD	cd00204	1.06E-6	797	903	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.6E-6	797	909	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	5.8	852	882	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1022 aa Download sequence Send to blast
MEAFGGGSRK FYSPTVSDLK AVGKKSLEWD LNDWKWDGDL FTASPLNAAP SDCRSRQLFP 60 LGPPETPSTA GLSNTSSSGS DDICPGNEKG KRELEKRRRD SIVENEELNN EVGCLNLKLG 120 EQAYPIMEGD VQTGKKTKIV GTTLNRAVCQ VEDCKADLSN AKDYHRRHKV CDMHSKATKA 180 SVGNVLQRFC QQCSRFHVLQ EFDEGRRSCR RRLAGHNRRR RKTHPDAVVN EGSLNDERGS 240 SYLLISLLRI LSNIHSNSSD QTKDQDLLSH LLKSLANLSG TVDGRNMSAL LTASQGLLNG 300 GTSTQTAQKV LDTVSNGCEP SKPSVSASKM NDYVNREDPS RPMQQCSTVP ASDFRRISSV 360 DADHGGLQVV SGVNATKPFP SIDRVPSTSV APEATTGRIQ LNGIDLNNTY DDSQDYLASL 420 GKSQFPVNSG TVPHGFPLWM RQDLQKSSPP QTSGTSYSTS SSSSGEVQSR TDRIVFKLFG 480 KDPNDLPIVL RSQILDWLSH SPTDIESYIR PGCVILTVYL RLEKSTWEEL CRNLGSILKR 540 LLHAANDPFW TTGWVYTRVQ HFVAFTYNGH VVLDTPLLLK NNKNCRISCI KPIAVSLSQR 600 TEIAVKGFNL SCATTRLLCA LEGKYLVQET CYDLVDGADT TIENDQLQCL RFSCSIPNVT 660 GRGFIEVEDH GLSSSFFPFI VAEQEVCSEI CMLEGAIEGA ETADGILAEP EKLEAKNQAM 720 DFINELGWLL HRGHTKFRLG HMDPNLDLFP FRRFRLLLEF SMDHDWCAVV KKLLGILLEG 780 TVDAGEHPSI ELALLDMSLL HRAVRRKCRP MVELLLSFVL DKELGKTGSE DGQQVGGDSN 840 KFLFKPDAVG LMGLTPLHVA ASTDGCENIL DALTDDPGKV GIKAWGNARD STGLTPNDYA 900 CQRSCYTYIQ IVQRKISKKL ESRHVVLDIP GIILDSSSKK KQLDGHKSSK VSSLETERID 960 IKAMQAHCKL CEMKLAYGNT KSLVYRPAML SMVAIAAVCV CAALLFKSSP VMWERLKYGT 1020 S*

Sequence ? help Back to Top

Protein Sequence Length: 1022 aa Download sequence Send to blast

MEAFGGGSRK FYSPTVSDLK AVGKKSLEWD LNDWKWDGDL FTASPLNAAP SDCRSRQLFP  60
LGPPETPSTA GLSNTSSSGS DDICPGNEKG KRELEKRRRD SIVENEELNN EVGCLNLKLG  120
EQAYPIMEGD VQTGKKTKIV GTTLNRAVCQ VEDCKADLSN AKDYHRRHKV CDMHSKATKA  180
SVGNVLQRFC QQCSRFHVLQ EFDEGRRSCR RRLAGHNRRR RKTHPDAVVN EGSLNDERGS  240
SYLLISLLRI LSNIHSNSSD QTKDQDLLSH LLKSLANLSG TVDGRNMSAL LTASQGLLNG  300
GTSTQTAQKV LDTVSNGCEP SKPSVSASKM NDYVNREDPS RPMQQCSTVP ASDFRRISSV  360
DADHGGLQVV SGVNATKPFP SIDRVPSTSV APEATTGRIQ LNGIDLNNTY DDSQDYLASL  420
GKSQFPVNSG TVPHGFPLWM RQDLQKSSPP QTSGTSYSTS SSSSGEVQSR TDRIVFKLFG  480
KDPNDLPIVL RSQILDWLSH SPTDIESYIR PGCVILTVYL RLEKSTWEEL CRNLGSILKR  540
LLHAANDPFW TTGWVYTRVQ HFVAFTYNGH VVLDTPLLLK NNKNCRISCI KPIAVSLSQR  600
TEIAVKGFNL SCATTRLLCA LEGKYLVQET CYDLVDGADT TIENDQLQCL RFSCSIPNVT  660
GRGFIEVEDH GLSSSFFPFI VAEQEVCSEI CMLEGAIEGA ETADGILAEP EKLEAKNQAM  720
DFINELGWLL HRGHTKFRLG HMDPNLDLFP FRRFRLLLEF SMDHDWCAVV KKLLGILLEG  780
TVDAGEHPSI ELALLDMSLL HRAVRRKCRP MVELLLSFVL DKELGKTGSE DGQQVGGDSN  840
KFLFKPDAVG LMGLTPLHVA ASTDGCENIL DALTDDPGKV GIKAWGNARD STGLTPNDYA  900
CQRSCYTYIQ IVQRKISKKL ESRHVVLDIP GIILDSSSKK KQLDGHKSSK VSSLETERID  960
IKAMQAHCKL CEMKLAYGNT KSLVYRPAML SMVAIAAVCV CAALLFKSSP VMWERLKYGT  1020
S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	148	222	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037762.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009359777.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
TrEMBL	A0A498HJS4	0.0	A0A498HJS4_MALDO; Uncharacterized protein
STRING	XP_009359777.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-174	squamosa promoter binding protein-like 1