PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037761.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 973aa    MW: 107916 Da    PI: 6.479
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037761.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43.2e-41143220178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  Pbr037761.1 143 VCQVEDCKADLSSAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNRRRRKTNP 220
                  6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-33138205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.129141218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-38142223IPR004333Transcription factor, SBP-box
PfamPF031101.9E-29144217IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.207.0E-6259273IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.23E-6753855IPR020683Ankyrin repeat-containing domain
CDDcd002041.62E-5789854No hitNo description
Gene3DG3DSA:1.25.40.207.0E-6790855IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MESEFGGMGG VMVPDLTGVG KRSMEWDLNG WKWDGDLFTA SPLNSTPSDG RSRQFFPVRP  60
ETLFDAGLSN SSSGSDNIGP GNEKGTRELE KRRRDVFVEN GELNDEAASL NLKLGGQTYP  120
VMEEEVQTGK KTKIIGTTSN RAVCQVEDCK ADLSSAKDYH RRHKVCDMHS KATKALVGNV  180
MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNRRRRKTNP DTAVNGGSLN NESGSSYLLI  240
SLLRILSNMH SSSSDQTKDQ DVVSHLLRSL ANVAGMADGR NVSKLLQGSQ GLFNSGTSVQ  300
TARKVLDMDD GVNPEDPLRP KGHCSILPAS RDSSESKSVT PEPTSRRFQL NDIDLNSTYD  360
DSQDFVENLG NSHVPASPGT ASPGFPSWMQ RDSHKSSPPQ TSGNSDLTST QSPSSSSGEA  420
QSRTDRIVFK LFGKDPSELP FALRSQILDW LSHSPTNIES YIRPGCIILT IYLRLEKSTW  480
EEFCCHLGSS LKTLLDAADD PFWRTGWVYT RVQHFVAFTY NGEVVLDTPL PLKTDKSCRI  540
SCIKPIAISL SERAEFVVKG LNLSRSTTRL LCALEGKYLV QETCYDLMDD ADSSVEDDEQ  600
QCLRFSCSIP NITGRGFIEV EDHGLSSSFF PFIVAEQEVC SEICMLEDVI EAAETDDDIQ  660
SGPEKVEAKN QALDFIHELG WLLHRSRVKF RLGQLDPNLD LFPFGRFRLL MEFSIDHDWC  720
AVVKKLLGIL FDGTVDAGKH PSVESALLDM HLLHRAVRRN GRHMASPPQS GSEQNKQVDK  780
DGNSFLFKPD VFGPMGLTPL HIAASTDGCE QVLDALTDDP GKVGIKAWKN ARDSTGLTPY  840
DYACLRSHYS YVQIVQRKIS KTLESGHVVL DIPGLTLDRN GKQKQSDADK SSRVASLETE  900
KNEIKAILRH CRLCEQKPAH STTRSLVYRP AMLSMVIVAA VCVCVALLFK STPEVLFVFE  960
PFRWEHLKFG SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-301432171084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037761.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359778.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A498HJS40.0A0A498HJS4_MALDO; Uncharacterized protein
STRINGXP_009359778.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]