PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037716.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 357aa    MW: 39485.4 Da    PI: 4.5119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037716.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12189232654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Pbr037716.1 189 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 232
                  589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15186245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9189232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.77E-5190236No hitNo description
Gene3DG3DSA:4.10.280.106.4E-15190245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MELSEHGFLE ELLLAPRRDS WSSFNSGLNE LFPINGWSLD SFEENPVLVS SLNPQFVGFS  60
TQSSFEECPF TTTTTASSSS YPFVVDGLCA VPEINGTTTP PPFPPPGHQD YPPMVEDEEF  120
GNFLGSENHS SCLELEESKN NDNLSTCKVE MDQQAADHHI IPSAFTMGLC GEKRSSKSKK  180
LEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDTIDYMK ELLERINKLQ  240
EEGTEEGTNQ ISLLGTSKDL NSSEVQVRNS PKFDVEMRDG DTRIDICCAA KPGLLLSTVN  300
TIEALGLEIK QCVISCFNDF SMQASCSEGA EQINLLSPQD IKQALFRNAG YGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191198ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037716.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894160.0KP689416.1 Prunus pseudocerasus isolate Unigene13488 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344518.10.0PREDICTED: transcription factor bHLH93
SwissprotQ9LSL11e-90BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A498KJP90.0A0A498KJP9_MALDO; Uncharacterized protein
STRINGXP_009344518.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-92beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]