PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr037666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 256aa MW: 28108.4 Da PI: 8.2247 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 134.4 | 1.3e-41 | 58 | 243 | 1 | 182 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +++lL++c++a+++++ + aq++L+ l+++a ++gd+++Rl+ f++AL ar ar + yk+ pp++ ++ +s ++l++ + +++ +++f++ +a Pbr037666.1 58 MKQLLVHCVNAIETNNSTVAQQILCVLNNIAPQEGDSNRRLTCAFLRALIARAAR--IGSYKSSPPWPIPKPTSPSTLTSSPSLIDLTSWHRFGFAAA 153 579****************************************************..78899999**999999************************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlv 182 N aIleav+g vHi+D+++++++Q p+L +a+a+R +pp l++T+ g +e + ++ee+g++L +fA++ ++ +ef+v+ Pbr037666.1 154 NAAILEAVQGYYVVHIVDLSLTHCMQIPTLVDAIAKRHdgnVSPPLLKLTVAGTMEDVppmLDLSYEELGSKLVNFARSRNIILEFRVIP 243 **************************************655569**********998898888999*********************974 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.506 | 32 | 255 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.3E-39 | 58 | 243 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MMQFTETPPP PLHEIITTPY SNNLPIMMNK NQTHRTRPWP GFPTSKSLGT NFGDANCMKQ 60 LLVHCVNAIE TNNSTVAQQI LCVLNNIAPQ EGDSNRRLTC AFLRALIARA ARIGSYKSSP 120 PWPIPKPTSP STLTSSPSLI DLTSWHRFGF AAANAAILEA VQGYYVVHIV DLSLTHCMQI 180 PTLVDAIAKR HDGNVSPPLL KLTVAGTMED VPPMLDLSYE ELGSKLVNFA RSRNIILEFR 240 VIPSSYIDGF ANLIQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 7e-22 | 53 | 242 | 82 | 275 | Protein SHORT-ROOT |
5b3h_B | 7e-22 | 53 | 242 | 28 | 221 | Protein SHORT-ROOT |
5b3h_E | 7e-22 | 53 | 242 | 28 | 221 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr037666.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009379313.1 | 1e-151 | PREDICTED: scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-74 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | M5VYZ6 | 1e-138 | M5VYZ6_PRUPE; Uncharacterized protein | ||||
STRING | XP_009379313.1 | 1e-151 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49950.1 | 3e-66 | GRAS family protein |