PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 226aa MW: 24046.3 Da PI: 8.1022 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127 | 5.8e-40 | 16 | 76 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s+ntkfCyynny+lsqPr+fCk+C+ryWtkGGalrn+P+Ggg+rkn k+s Pbr037525.1 16 EQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPIGGGSRKNTKKS 76 57899****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 11 | 68 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-33 | 18 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.078 | 20 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 22 | 58 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MQDPATFQPM KPQFPEQEQL KCPRCESSNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGAL 60 RNIPIGGGSR KNTKKSSSSA SKRSSSTSSS SLSSSSAAAA QNPDPQPDRT RAYGSKVDQD 120 SGVMDFSGSF SSLLTSNGQF GSLLEGLNPN GSGLKLMQMG DFGENLDAAG NVMNSDPGPG 180 LEGQSHGNPE SYMGLQNGDS STSSCWNGAN GWPDLAIYTP GSSFQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037525.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009344438.1 | 1e-164 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
Refseq | XP_009344445.1 | 1e-164 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
Swissprot | O82155 | 2e-42 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A498H7I8 | 1e-161 | A0A498H7I8_MALDO; Uncharacterized protein | ||||
STRING | XP_009344438.1 | 1e-164 | (Pyrus x bretschneideri) | ||||
STRING | XP_009344445.1 | 1e-164 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6181 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 5e-37 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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