PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037518.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 226aa    MW: 24046.3 Da    PI: 8.1022
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037518.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1275.8e-401676262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 ++++lkcprC+s+ntkfCyynny+lsqPr+fCk+C+ryWtkGGalrn+P+Ggg+rkn k+s
  Pbr037518.1 16 EQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPIGGGSRKNTKKS 76
                 57899****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-261168IPR003851Zinc finger, Dof-type
PfamPF027012.1E-331874IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0782074IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQDPATFQPM KPQFPEQEQL KCPRCESSNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGAL  60
RNIPIGGGSR KNTKKSSSSA SKRSSSTSSS SLSSSSAAAA QNPDPQPDRT RAYGSKVDQD  120
SGVMDFSGSF SSLLTSNGQF GSLLEGLNPN GSGLKLMQMG DFGENLDAAG NVMNSDPGPG  180
LEGQSHGNPE SYMGLQNGDS STSSCWNGAN GWPDLAIYTP GSSFQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037518.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344438.11e-164PREDICTED: dof zinc finger protein DOF3.1-like
RefseqXP_009344445.11e-164PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotO821552e-42DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A498H7I81e-161A0A498H7I8_MALDO; Uncharacterized protein
STRINGXP_009344438.11e-164(Pyrus x bretschneideri)
STRINGXP_009344445.11e-164(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.15e-37DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]