PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037448.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 429aa    MW: 46421.9 Da    PI: 7.2565
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037448.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP91.68.2e-2997155260
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS-- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekr 60 
                  C v+gC++dls++++yhrrhkvCe hsk+p+v+++g +qrfCqqCsrfh+ +efDe+k 
  Pbr037448.1  97 CLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTINGNKQRFCQQCSRFHAPEEFDEGKX 155
                  ********************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-2990154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114122.38494171IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-2795155IPR004333Transcription factor, SBP-box
PfamPF031101.4E-2197154IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDWNLKAASW DLPELEQGTF SNLDTTVDGS SSFGDHRTFK GSNFSVDLKL GQLGGPGNNE  60
LVGMLKEPGG PKTTSSSPSG SLKRSRAAYS GSQMVSCLVD GCNSDLSTCR DYHRRHKVCE  120
LHSKTPQVTI NGNKQRFCQQ CSRFHAPEEF DEGKXXXXXX XXXXXXXXXX XXREVAGNVL  180
MDTTGGEGSL NQNPCRTREV FCTQLLPFSS SLVYPSTNVI NPAWAGIVKT EPDSGVHNLQ  240
LPLIDKQNMF LGSSGSTSSS GYKGGKQFSL FQSSNSSPLH HNHQTSHHHG TSVCQPLLNN  300
ISFSETASGG GGTTKSKMFC DRLTTQIHDS DCALSLLSSP QTQQTSEIGL RHTVQQPNSI  360
SLMQQRPGPN GLRGNNSAME PMDSVLVSNG SGDANVHCPG MFRLISDGSQ GNGNQHHQSP  420
QTLPFHWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-2095151460squamosa promoter-binding protein-like 12
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037448.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344279.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A2R4QL790.0A0A2R4QL79_9ROSA; SPL domain class transcription factor 2
TrEMBLD9ZJC10.0D9ZJC1_MALDO; SPL domain class transcription factor
STRINGXP_009344279.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.15e-44SBP family protein