PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037444.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19355.3 Da PI: 10.8313 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 6.8e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n + r vtfskRrng+lKKA+ELS+LCdaevavi+fs++gk ye++s Pbr037444.1 9 KRIDNPTSRDVTFSKRRNGLLKKAFELSILCDAEVAVIVFSHSGKAYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 60.6 | 6.2e-21 | 84 | 159 | 9 | 84 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++++e++++e + L++ i+nL+ +++l Ge+L++L ++eL+qLe+qL++++++iRsk +++ e+++ l++k Pbr037444.1 84 RRARTMEYWRNETEGLRRSIQNLEMRLKNLAGEELSTLGMQELKQLERQLKTGVERIRSKSRQIISENVNLLKRKG 159 566789*******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.314 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.22E-30 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.53E-37 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 2.6E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-17 | 88 | 160 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.544 | 89 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGRGKVELKR IDNPTSRDVT FSKRRNGLLK KAFELSILCD AEVAVIVFSH SGKAYEFASH 60 DINRTIAMYR REVGLPEANN STFRRARTME YWRNETEGLR RSIQNLEMRL KNLAGEELST 120 LGMQELKQLE RQLKTGVERI RSKSRQIISE NVNLLKRKGY VLAATPAAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-19 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 1e-19 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 1e-19 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 1e-19 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037444.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP164013 | 0.0 | KP164013.1 Pyrus pyrifolia clone PpTM8-1 TM8-like MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018500262.1 | 1e-112 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_018507109.1 | 1e-112 | PREDICTED: MADS-box transcription factor 23-like | ||||
TrEMBL | A0A0D4ZYU7 | 1e-111 | A0A0D4ZYU7_PYRPY; TM8-like MADS-box protein | ||||
STRING | XP_009344275.1 | 1e-112 | (Pyrus x bretschneideri) | ||||
STRING | XP_009375197.1 | 1e-112 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 3e-46 | MIKC_MADS family protein |